miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23440 5' -55.8 NC_005259.1 + 49584 0.68 0.635446
Target:  5'- aCCGGCGggCggggucagcacCUCGaccUCGGGCAGCu -3'
miRNA:   3'- gGGCUGCuaGaa---------GAGC---AGCCCGUCGu -5'
23440 5' -55.8 NC_005259.1 + 49716 0.67 0.732315
Target:  5'- aUCCGGCaGAUa--UUCGgCGGGCGGCGa -3'
miRNA:   3'- -GGGCUG-CUAgaaGAGCaGCCCGUCGU- -5'
23440 5' -55.8 NC_005259.1 + 50687 0.66 0.771428
Target:  5'- gCCGACGAggcgCUgCUCGUCGucgcgcuugagccGGguGCu -3'
miRNA:   3'- gGGCUGCUa---GAaGAGCAGC-------------CCguCGu -5'
23440 5' -55.8 NC_005259.1 + 52744 0.67 0.707491
Target:  5'- gCCGGgauCGAUCUgcacaacaucgagCUCGUCGgugucGGCAGCGu -3'
miRNA:   3'- gGGCU---GCUAGAa------------GAGCAGC-----CCGUCGU- -5'
23440 5' -55.8 NC_005259.1 + 55015 0.71 0.481437
Target:  5'- gCuuGGCGGUCgUCUCGgcaCGGGCuGCc -3'
miRNA:   3'- -GggCUGCUAGaAGAGCa--GCCCGuCGu -5'
23440 5' -55.8 NC_005259.1 + 58917 0.77 0.228492
Target:  5'- gUCGGCGGUCUUgUCGUCGgcgggcgcgguGGCAGCGu -3'
miRNA:   3'- gGGCUGCUAGAAgAGCAGC-----------CCGUCGU- -5'
23440 5' -55.8 NC_005259.1 + 60052 0.72 0.433333
Target:  5'- uUCGG-GGUCUUCUCGggcucaggcUCGGGCGGCu -3'
miRNA:   3'- gGGCUgCUAGAAGAGC---------AGCCCGUCGu -5'
23440 5' -55.8 NC_005259.1 + 60200 0.68 0.626903
Target:  5'- aCCGggccACGAUCUcgccgaUCUCGUCGGcGCugAGCu -3'
miRNA:   3'- gGGC----UGCUAGA------AGAGCAGCC-CG--UCGu -5'
23440 5' -55.8 NC_005259.1 + 60283 0.66 0.752591
Target:  5'- gCCgGGCGGcCaUCgUCGUCGGuGCGGCc -3'
miRNA:   3'- -GGgCUGCUaGaAG-AGCAGCC-CGUCGu -5'
23440 5' -55.8 NC_005259.1 + 62538 0.67 0.709576
Target:  5'- cCUCGACGGUCcgagagauagcCUCacCGGGCAGCGg -3'
miRNA:   3'- -GGGCUGCUAGaa---------GAGcaGCCCGUCGU- -5'
23440 5' -55.8 NC_005259.1 + 62708 0.68 0.669548
Target:  5'- aUCCGGCGAUCaggcgggggaUCUCGcUCGaccggaccGGCGGCAg -3'
miRNA:   3'- -GGGCUGCUAGa---------AGAGC-AGC--------CCGUCGU- -5'
23440 5' -55.8 NC_005259.1 + 63933 0.73 0.396931
Target:  5'- aCUCGugGGUCUUaC-CGUCcGGCAGCGa -3'
miRNA:   3'- -GGGCugCUAGAA-GaGCAGcCCGUCGU- -5'
23440 5' -55.8 NC_005259.1 + 64611 0.66 0.772407
Target:  5'- aCUGACGG-CgagCgCGaCGGGCAGCAg -3'
miRNA:   3'- gGGCUGCUaGaa-GaGCaGCCCGUCGU- -5'
23440 5' -55.8 NC_005259.1 + 67582 0.66 0.772407
Target:  5'- -aUGAUGAUCgacgCGUCGGGC-GCGa -3'
miRNA:   3'- ggGCUGCUAGaagaGCAGCCCGuCGU- -5'
23440 5' -55.8 NC_005259.1 + 68691 0.67 0.701216
Target:  5'- uCUCGAUGAUCga---GgCGGGCAGCGc -3'
miRNA:   3'- -GGGCUGCUAGaagagCaGCCCGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.