miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23440 5' -55.8 NC_005259.1 + 37583 0.67 0.701216
Target:  5'- gCCCGcgcCGAUCUgcaagCUgaaCGUCGGGCcgAGCu -3'
miRNA:   3'- -GGGCu--GCUAGAa----GA---GCAGCCCG--UCGu -5'
23440 5' -55.8 NC_005259.1 + 37520 0.75 0.272289
Target:  5'- gCCCGACGAgaagaUCGUCGGGCcGCc -3'
miRNA:   3'- -GGGCUGCUagaagAGCAGCCCGuCGu -5'
23440 5' -55.8 NC_005259.1 + 32561 0.76 0.252742
Target:  5'- cCCCGGCGAgcgCggggauagCGUUGGGCAGCGg -3'
miRNA:   3'- -GGGCUGCUa--Gaaga----GCAGCCCGUCGU- -5'
23440 5' -55.8 NC_005259.1 + 30083 0.66 0.772407
Target:  5'- aCCCGAUG-UCgaccgccCUCGUCGGaGCuguguGCAu -3'
miRNA:   3'- -GGGCUGCuAGaa-----GAGCAGCC-CGu----CGU- -5'
23440 5' -55.8 NC_005259.1 + 19194 0.66 0.782115
Target:  5'- cCUCGACag-CgagCUCGUggugCGGGCGGCGa -3'
miRNA:   3'- -GGGCUGcuaGaa-GAGCA----GCCCGUCGU- -5'
23440 5' -55.8 NC_005259.1 + 18705 0.68 0.637581
Target:  5'- -aCGGCGGUCUgacCUCGaucaUCGGGCcgcccGGCAu -3'
miRNA:   3'- ggGCUGCUAGAa--GAGC----AGCCCG-----UCGU- -5'
23440 5' -55.8 NC_005259.1 + 14223 0.69 0.60557
Target:  5'- aCCCGGCGcgCgUCgugCGuaUCGGGCcgGGCAa -3'
miRNA:   3'- -GGGCUGCuaGaAGa--GC--AGCCCG--UCGU- -5'
23440 5' -55.8 NC_005259.1 + 10754 0.73 0.370953
Target:  5'- gCCgGGCGAUCaUCaUGUCGGGCGGg- -3'
miRNA:   3'- -GGgCUGCUAGaAGaGCAGCCCGUCgu -5'
23440 5' -55.8 NC_005259.1 + 10163 0.7 0.542336
Target:  5'- aCUGACGAUCUcgggaaaCUCugaGGGCAGCAc -3'
miRNA:   3'- gGGCUGCUAGAa------GAGcagCCCGUCGU- -5'
23440 5' -55.8 NC_005259.1 + 8806 0.69 0.60557
Target:  5'- -gCGAgGAUCUUCUCGcgcCGGGcCGGUg -3'
miRNA:   3'- ggGCUgCUAGAAGAGCa--GCCC-GUCGu -5'
23440 5' -55.8 NC_005259.1 + 7791 0.66 0.772407
Target:  5'- cCCCGGCGGggUUUUCUCGUuuguaaugacCGguaaugacccGGCGGCGg -3'
miRNA:   3'- -GGGCUGCU--AGAAGAGCA----------GC----------CCGUCGU- -5'
23440 5' -55.8 NC_005259.1 + 7479 0.68 0.679092
Target:  5'- uCCCGACauaggcgGGUaaguuagUUCUUGUCGGGCGGgAg -3'
miRNA:   3'- -GGGCUG-------CUAg------AAGAGCAGCCCGUCgU- -5'
23440 5' -55.8 NC_005259.1 + 3305 0.66 0.752591
Target:  5'- cCUCGGCGAgcgCUgcgUCgacgugagCGcCGGGCAGCu -3'
miRNA:   3'- -GGGCUGCUa--GA---AGa-------GCaGCCCGUCGu -5'
23440 5' -55.8 NC_005259.1 + 3172 0.7 0.542336
Target:  5'- gCCCGGCGAUg-UCaaggUCGUCGGuGCGcGCAc -3'
miRNA:   3'- -GGGCUGCUAgaAG----AGCAGCC-CGU-CGU- -5'
23440 5' -55.8 NC_005259.1 + 916 0.71 0.498379
Target:  5'- gCCCGGCGAUCaccugcugCUgCGcgacagcggaaaagUCGGGCAGCu -3'
miRNA:   3'- -GGGCUGCUAGaa------GA-GC--------------AGCCCGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.