Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23440 | 5' | -55.8 | NC_005259.1 | + | 44657 | 0.66 | 0.782115 |
Target: 5'- gCCCGAcuCGAaCgccacacCGUUGGGCAGCGu -3' miRNA: 3'- -GGGCU--GCUaGaaga---GCAGCCCGUCGU- -5' |
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23440 | 5' | -55.8 | NC_005259.1 | + | 8806 | 0.69 | 0.60557 |
Target: 5'- -gCGAgGAUCUUCUCGcgcCGGGcCGGUg -3' miRNA: 3'- ggGCUgCUAGAAGAGCa--GCCC-GUCGu -5' |
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23440 | 5' | -55.8 | NC_005259.1 | + | 14223 | 0.69 | 0.60557 |
Target: 5'- aCCCGGCGcgCgUCgugCGuaUCGGGCcgGGCAa -3' miRNA: 3'- -GGGCUGCuaGaAGa--GC--AGCCCG--UCGU- -5' |
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23440 | 5' | -55.8 | NC_005259.1 | + | 60200 | 0.68 | 0.626903 |
Target: 5'- aCCGggccACGAUCUcgccgaUCUCGUCGGcGCugAGCu -3' miRNA: 3'- gGGC----UGCUAGA------AGAGCAGCC-CG--UCGu -5' |
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23440 | 5' | -55.8 | NC_005259.1 | + | 49584 | 0.68 | 0.635446 |
Target: 5'- aCCGGCGggCggggucagcacCUCGaccUCGGGCAGCu -3' miRNA: 3'- gGGCUGCuaGaa---------GAGC---AGCCCGUCGu -5' |
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23440 | 5' | -55.8 | NC_005259.1 | + | 18705 | 0.68 | 0.637581 |
Target: 5'- -aCGGCGGUCUgacCUCGaucaUCGGGCcgcccGGCAu -3' miRNA: 3'- ggGCUGCUAGAa--GAGC----AGCCCG-----UCGU- -5' |
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23440 | 5' | -55.8 | NC_005259.1 | + | 41516 | 0.68 | 0.665298 |
Target: 5'- aCCGugGAUCUgcacggggaaaagCUCGUCGucGCAGUc -3' miRNA: 3'- gGGCugCUAGAa------------GAGCAGCc-CGUCGu -5' |
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23440 | 5' | -55.8 | NC_005259.1 | + | 62708 | 0.68 | 0.669548 |
Target: 5'- aUCCGGCGAUCaggcgggggaUCUCGcUCGaccggaccGGCGGCAg -3' miRNA: 3'- -GGGCUGCUAGa---------AGAGC-AGC--------CCGUCGU- -5' |
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23440 | 5' | -55.8 | NC_005259.1 | + | 7479 | 0.68 | 0.679092 |
Target: 5'- uCCCGACauaggcgGGUaaguuagUUCUUGUCGGGCGGgAg -3' miRNA: 3'- -GGGCUG-------CUAg------AAGAGCAGCCCGUCgU- -5' |
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23440 | 5' | -55.8 | NC_005259.1 | + | 3172 | 0.7 | 0.542336 |
Target: 5'- gCCCGGCGAUg-UCaaggUCGUCGGuGCGcGCAc -3' miRNA: 3'- -GGGCUGCUAgaAG----AGCAGCC-CGU-CGU- -5' |
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23440 | 5' | -55.8 | NC_005259.1 | + | 10163 | 0.7 | 0.542336 |
Target: 5'- aCUGACGAUCUcgggaaaCUCugaGGGCAGCAc -3' miRNA: 3'- gGGCUGCUAGAa------GAGcagCCCGUCGU- -5' |
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23440 | 5' | -55.8 | NC_005259.1 | + | 916 | 0.71 | 0.498379 |
Target: 5'- gCCCGGCGAUCaccugcugCUgCGcgacagcggaaaagUCGGGCAGCu -3' miRNA: 3'- -GGGCUGCUAGaa------GA-GC--------------AGCCCGUCGu -5' |
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23440 | 5' | -55.8 | NC_005259.1 | + | 32561 | 0.76 | 0.252742 |
Target: 5'- cCCCGGCGAgcgCggggauagCGUUGGGCAGCGg -3' miRNA: 3'- -GGGCUGCUa--Gaaga----GCAGCCCGUCGU- -5' |
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23440 | 5' | -55.8 | NC_005259.1 | + | 37520 | 0.75 | 0.272289 |
Target: 5'- gCCCGACGAgaagaUCGUCGGGCcGCc -3' miRNA: 3'- -GGGCUGCUagaagAGCAGCCCGuCGu -5' |
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23440 | 5' | -55.8 | NC_005259.1 | + | 41851 | 0.75 | 0.279069 |
Target: 5'- cCUCGACGGUgUcccaCUCGaCGGGCAGCAc -3' miRNA: 3'- -GGGCUGCUAgAa---GAGCaGCCCGUCGU- -5' |
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23440 | 5' | -55.8 | NC_005259.1 | + | 10754 | 0.73 | 0.370953 |
Target: 5'- gCCgGGCGAUCaUCaUGUCGGGCGGg- -3' miRNA: 3'- -GGgCUGCUAGaAGaGCAGCCCGUCgu -5' |
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23440 | 5' | -55.8 | NC_005259.1 | + | 63933 | 0.73 | 0.396931 |
Target: 5'- aCUCGugGGUCUUaC-CGUCcGGCAGCGa -3' miRNA: 3'- -GGGCugCUAGAA-GaGCAGcCCGUCGU- -5' |
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23440 | 5' | -55.8 | NC_005259.1 | + | 60052 | 0.72 | 0.433333 |
Target: 5'- uUCGG-GGUCUUCUCGggcucaggcUCGGGCGGCu -3' miRNA: 3'- gGGCUgCUAGAAGAGC---------AGCCCGUCGu -5' |
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23440 | 5' | -55.8 | NC_005259.1 | + | 55015 | 0.71 | 0.481437 |
Target: 5'- gCuuGGCGGUCgUCUCGgcaCGGGCuGCc -3' miRNA: 3'- -GggCUGCUAGaAGAGCa--GCCCGuCGu -5' |
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23440 | 5' | -55.8 | NC_005259.1 | + | 47609 | 0.71 | 0.481437 |
Target: 5'- gUCGGCGAggcugagguUCUUgUCGUCgccgaGGGCAGCGa -3' miRNA: 3'- gGGCUGCU---------AGAAgAGCAG-----CCCGUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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