Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23441 | 3' | -57.1 | NC_005259.1 | + | 32220 | 0.66 | 0.724134 |
Target: 5'- aCACCGacgccUCGGCACCGAgcUgCUCGa-- -3' miRNA: 3'- -GUGGC-----AGCCGUGGCUauAgGGGCagu -5' |
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23441 | 3' | -57.1 | NC_005259.1 | + | 37054 | 0.69 | 0.494483 |
Target: 5'- cCACCGcccaCGGCGgCGGUGUCCaCGUCc -3' miRNA: 3'- -GUGGCa---GCCGUgGCUAUAGGgGCAGu -5' |
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23441 | 3' | -57.1 | NC_005259.1 | + | 22800 | 0.69 | 0.51458 |
Target: 5'- uCACCGagGGUGCCGAUuUCCCgaugugugacugCGUCGu -3' miRNA: 3'- -GUGGCagCCGUGGCUAuAGGG------------GCAGU- -5' |
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23441 | 3' | -57.1 | NC_005259.1 | + | 58197 | 0.69 | 0.535002 |
Target: 5'- cCGCCGUgGGCuuGCCGGUGUCaggGUCAg -3' miRNA: 3'- -GUGGCAgCCG--UGGCUAUAGgggCAGU- -5' |
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23441 | 3' | -57.1 | NC_005259.1 | + | 40146 | 0.69 | 0.54532 |
Target: 5'- uCGCCGUCGGUugUcGGUGcccgCCCCGgCAg -3' miRNA: 3'- -GUGGCAGCCGugG-CUAUa---GGGGCaGU- -5' |
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23441 | 3' | -57.1 | NC_005259.1 | + | 61791 | 0.68 | 0.555701 |
Target: 5'- aCACCGgCGGC-CUGAUAgCCCUGUa- -3' miRNA: 3'- -GUGGCaGCCGuGGCUAUaGGGGCAgu -5' |
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23441 | 3' | -57.1 | NC_005259.1 | + | 53255 | 0.68 | 0.566139 |
Target: 5'- aCACCGUCGcCGCCGcUGUCgCCGg-- -3' miRNA: 3'- -GUGGCAGCcGUGGCuAUAGgGGCagu -5' |
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23441 | 3' | -57.1 | NC_005259.1 | + | 6444 | 0.68 | 0.583994 |
Target: 5'- gCACCGUCGcGCugaucggcagcgucGCCGGUG-CCCUGUa- -3' miRNA: 3'- -GUGGCAGC-CG--------------UGGCUAUaGGGGCAgu -5' |
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23441 | 3' | -57.1 | NC_005259.1 | + | 47194 | 0.67 | 0.608316 |
Target: 5'- uGCCGUCGGCgaagaacuuGCCGAgcuucugcUGUCCCuCGa-- -3' miRNA: 3'- gUGGCAGCCG---------UGGCU--------AUAGGG-GCagu -5' |
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23441 | 3' | -57.1 | NC_005259.1 | + | 61498 | 0.7 | 0.455421 |
Target: 5'- gACCGUUgaGGCGCuCGGUGUgCCgGUCGa -3' miRNA: 3'- gUGGCAG--CCGUG-GCUAUAgGGgCAGU- -5' |
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23441 | 3' | -57.1 | NC_005259.1 | + | 9326 | 0.7 | 0.449704 |
Target: 5'- uCACCGaugaacgugucgaggUCGGCACCGAUGa--CCGUCu -3' miRNA: 3'- -GUGGC---------------AGCCGUGGCUAUaggGGCAGu -5' |
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23441 | 3' | -57.1 | NC_005259.1 | + | 30126 | 0.71 | 0.427245 |
Target: 5'- uGCCGUcCGGCugCGAUA-CCUCGggCAg -3' miRNA: 3'- gUGGCA-GCCGugGCUAUaGGGGCa-GU- -5' |
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23441 | 3' | -57.1 | NC_005259.1 | + | 47717 | 0.74 | 0.255619 |
Target: 5'- uGCCuuGUCGGCGaacgucCCGAUGUCCuuGUCGa -3' miRNA: 3'- gUGG--CAGCCGU------GGCUAUAGGggCAGU- -5' |
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23441 | 3' | -57.1 | NC_005259.1 | + | 62952 | 0.74 | 0.268572 |
Target: 5'- uGCCG--GGCACCGcUGUCCUCGUCGu -3' miRNA: 3'- gUGGCagCCGUGGCuAUAGGGGCAGU- -5' |
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23441 | 3' | -57.1 | NC_005259.1 | + | 9712 | 0.73 | 0.303264 |
Target: 5'- gCACCGUCcucgGGCcggucgagcucGCCGAUGUUCCgGUCAu -3' miRNA: 3'- -GUGGCAG----CCG-----------UGGCUAUAGGGgCAGU- -5' |
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23441 | 3' | -57.1 | NC_005259.1 | + | 31745 | 0.72 | 0.341303 |
Target: 5'- uGCCG-CGaGCGCUGGUGUccccaccgCCCCGUCAu -3' miRNA: 3'- gUGGCaGC-CGUGGCUAUA--------GGGGCAGU- -5' |
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23441 | 3' | -57.1 | NC_005259.1 | + | 25574 | 0.72 | 0.357455 |
Target: 5'- aGCCGaaucagUCGGCACCGuucAUCCUCGUUg -3' miRNA: 3'- gUGGC------AGCCGUGGCua-UAGGGGCAGu -5' |
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23441 | 3' | -57.1 | NC_005259.1 | + | 65122 | 0.71 | 0.409045 |
Target: 5'- uCACCGUCGGCgcACCGGcggccacCCCCGaCAa -3' miRNA: 3'- -GUGGCAGCCG--UGGCUaua----GGGGCaGU- -5' |
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23441 | 3' | -57.1 | NC_005259.1 | + | 42200 | 0.71 | 0.412646 |
Target: 5'- gCGCCGUCGcgauggaugcccgccGCGCCGccGUCCCCGg-- -3' miRNA: 3'- -GUGGCAGC---------------CGUGGCuaUAGGGGCagu -5' |
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23441 | 3' | -57.1 | NC_005259.1 | + | 28274 | 0.71 | 0.424484 |
Target: 5'- aACCGUCGGCucuGCCGAUGUaggccacggugccgCCCUGcgCAg -3' miRNA: 3'- gUGGCAGCCG---UGGCUAUA--------------GGGGCa-GU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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