miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23441 5' -63.2 NC_005259.1 + 58863 0.66 0.439775
Target:  5'- gCUCGCCGuCGUCGUCGuCGCcucGGCa- -3'
miRNA:   3'- -GAGUGGCcGCAGCAGCcGCGc--CCGcc -5'
23441 5' -63.2 NC_005259.1 + 54496 0.66 0.413521
Target:  5'- gUCAUCGGCGggcauggCGGCGaugugGGGUGGc -3'
miRNA:   3'- gAGUGGCCGCagca---GCCGCg----CCCGCC- -5'
23441 5' -63.2 NC_005259.1 + 50998 0.66 0.404986
Target:  5'- gUCACCGGCGaaaaaccggaCGUUGGuCGUGcuaccgacgagcGGCGGg -3'
miRNA:   3'- gAGUGGCCGCa---------GCAGCC-GCGC------------CCGCC- -5'
23441 5' -63.2 NC_005259.1 + 20974 0.67 0.396564
Target:  5'- aUCGCCGGgGUgacaacugcgUGUgGGCcuacuCGGGCGGc -3'
miRNA:   3'- gAGUGGCCgCA----------GCAgCCGc----GCCCGCC- -5'
23441 5' -63.2 NC_005259.1 + 51796 0.67 0.388255
Target:  5'- -gCGCuCGGCGg-GUCGGUcagcucagGCaGGGCGGg -3'
miRNA:   3'- gaGUG-GCCGCagCAGCCG--------CG-CCCGCC- -5'
23441 5' -63.2 NC_005259.1 + 14036 0.67 0.388255
Target:  5'- aUCAUCGaGCGgcagcgcaUCGUCGGCGaCGagaccagcacGGCGGu -3'
miRNA:   3'- gAGUGGC-CGC--------AGCAGCCGC-GC----------CCGCC- -5'
23441 5' -63.2 NC_005259.1 + 2051 0.67 0.38743
Target:  5'- gUCACCGGCacCGagacaCGGCGguucaauUGGGCGGg -3'
miRNA:   3'- gAGUGGCCGcaGCa----GCCGC-------GCCCGCC- -5'
23441 5' -63.2 NC_005259.1 + 41089 0.67 0.380061
Target:  5'- --aGCCGGuCGUaGUCGGCGgucGGCGGu -3'
miRNA:   3'- gagUGGCC-GCAgCAGCCGCgc-CCGCC- -5'
23441 5' -63.2 NC_005259.1 + 42043 0.67 0.380061
Target:  5'- gUCgACUGcGCuGUCcUCGGgGUGGGCGGc -3'
miRNA:   3'- gAG-UGGC-CG-CAGcAGCCgCGCCCGCC- -5'
23441 5' -63.2 NC_005259.1 + 55011 0.67 0.364024
Target:  5'- gCUCGCuUGGCgGUCGucUCGGCaCGGGCu- -3'
miRNA:   3'- -GAGUG-GCCG-CAGC--AGCCGcGCCCGcc -5'
23441 5' -63.2 NC_005259.1 + 67436 0.67 0.364024
Target:  5'- gCUCACgcuugaGcGCGUCGgggaugcccuuuUCGGCGauGGCGGg -3'
miRNA:   3'- -GAGUGg-----C-CGCAGC------------AGCCGCgcCCGCC- -5'
23441 5' -63.2 NC_005259.1 + 45521 0.67 0.356183
Target:  5'- -gCGCCGGUGUUGgccgccgUGGCuGCGaGCGGg -3'
miRNA:   3'- gaGUGGCCGCAGCa------GCCG-CGCcCGCC- -5'
23441 5' -63.2 NC_005259.1 + 14216 0.68 0.348462
Target:  5'- aUCAacuacCCGGCGcgCGUCGuGCGUaucGGGcCGGg -3'
miRNA:   3'- gAGU-----GGCCGCa-GCAGC-CGCG---CCC-GCC- -5'
23441 5' -63.2 NC_005259.1 + 56025 0.68 0.348462
Target:  5'- cCUCGCCGGgCGggacuuccUCGggCGGCuGCGGGUa- -3'
miRNA:   3'- -GAGUGGCC-GC--------AGCa-GCCG-CGCCCGcc -5'
23441 5' -63.2 NC_005259.1 + 18850 0.68 0.348462
Target:  5'- uCUCGCCGGUGcCGUgcaacgguugCGcGCGUGGGaGGc -3'
miRNA:   3'- -GAGUGGCCGCaGCA----------GC-CGCGCCCgCC- -5'
23441 5' -63.2 NC_005259.1 + 51666 0.68 0.348462
Target:  5'- -gCGCgGGCG-CGUCgGGCaCGGGCGc -3'
miRNA:   3'- gaGUGgCCGCaGCAG-CCGcGCCCGCc -5'
23441 5' -63.2 NC_005259.1 + 40881 0.68 0.340861
Target:  5'- gCUCACCGGCcacCGU-GGCG-GGGuCGGc -3'
miRNA:   3'- -GAGUGGCCGca-GCAgCCGCgCCC-GCC- -5'
23441 5' -63.2 NC_005259.1 + 26821 0.68 0.326021
Target:  5'- -gUACCGGCGg---UGGUGCcgGGGCGGu -3'
miRNA:   3'- gaGUGGCCGCagcaGCCGCG--CCCGCC- -5'
23441 5' -63.2 NC_005259.1 + 57438 0.68 0.326021
Target:  5'- gCUUACgCGGCGagGUUGGUGCGacgcuGCGGc -3'
miRNA:   3'- -GAGUG-GCCGCagCAGCCGCGCc----CGCC- -5'
23441 5' -63.2 NC_005259.1 + 53538 0.68 0.326021
Target:  5'- --gGCuCGGUGcccggUGUCGGCuCGGGCGGu -3'
miRNA:   3'- gagUG-GCCGCa----GCAGCCGcGCCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.