miRNA display CGI


Results 21 - 40 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23443 5' -54.7 NC_005259.1 + 56339 0.67 0.76003
Target:  5'- cCGACuuccucuGCGuuGCccuCGGGCACGCGGUa -3'
miRNA:   3'- -GUUGu------CGUggCGcu-GCUCGUGUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 10329 0.67 0.76003
Target:  5'- ---gGGCuCgGCGACGGGCucgGCGGCa -3'
miRNA:   3'- guugUCGuGgCGCUGCUCGug-UGUCG- -5'
23443 5' -54.7 NC_005259.1 + 7767 0.67 0.749806
Target:  5'- aCAACAGagaaACCcCGcCGAGCGCccCGGCg -3'
miRNA:   3'- -GUUGUCg---UGGcGCuGCUCGUGu-GUCG- -5'
23443 5' -54.7 NC_005259.1 + 10187 0.67 0.749806
Target:  5'- gGGCAGCACauCGUGAUGAcgacCGgGCAGCu -3'
miRNA:   3'- gUUGUCGUG--GCGCUGCUc---GUgUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 22762 0.67 0.749806
Target:  5'- aAACGGCACCGCcaaGGCGcuGguCACuguGCa -3'
miRNA:   3'- gUUGUCGUGGCG---CUGCu-CguGUGu--CG- -5'
23443 5' -54.7 NC_005259.1 + 48452 0.67 0.749806
Target:  5'- gCGGCAGCGCguuccaccgCGCGcCGGGuCGCGuCGGCc -3'
miRNA:   3'- -GUUGUCGUG---------GCGCuGCUC-GUGU-GUCG- -5'
23443 5' -54.7 NC_005259.1 + 46774 0.67 0.742578
Target:  5'- cCGACAGCcgcgcccGCCGgGccgaacaccgagccuGCGAGCGCACcaccGGCc -3'
miRNA:   3'- -GUUGUCG-------UGGCgC---------------UGCUCGUGUG----UCG- -5'
23443 5' -54.7 NC_005259.1 + 41335 0.67 0.739464
Target:  5'- gGGCGGUGCCGUcggauaccacGACGAacucccaGCACAGCg -3'
miRNA:   3'- gUUGUCGUGGCG----------CUGCUcg-----UGUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 21489 0.67 0.739464
Target:  5'- gAACuGCACCGCccucgGugGAGCA-ACuGCa -3'
miRNA:   3'- gUUGuCGUGGCG-----CugCUCGUgUGuCG- -5'
23443 5' -54.7 NC_005259.1 + 35812 0.67 0.739464
Target:  5'- gGACGGUGCCGU-ACGAcccCGCAUAGCc -3'
miRNA:   3'- gUUGUCGUGGCGcUGCUc--GUGUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 27164 0.67 0.739464
Target:  5'- cCAACGauGCcguCgGCGAUGAGCAgGCuGCg -3'
miRNA:   3'- -GUUGU--CGu--GgCGCUGCUCGUgUGuCG- -5'
23443 5' -54.7 NC_005259.1 + 65340 0.67 0.739464
Target:  5'- gAGCuGCugUGCG-CGGGCACgucGCAGg -3'
miRNA:   3'- gUUGuCGugGCGCuGCUCGUG---UGUCg -5'
23443 5' -54.7 NC_005259.1 + 15591 0.67 0.729015
Target:  5'- gCGACGG-GCCGC-AUGAGC-UACGGCa -3'
miRNA:   3'- -GUUGUCgUGGCGcUGCUCGuGUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 46366 0.67 0.729015
Target:  5'- gCGAUGGCACCGCccGGCcccaucuCACGCAGCc -3'
miRNA:   3'- -GUUGUCGUGGCG--CUGcuc----GUGUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 51643 0.67 0.727965
Target:  5'- gAGCGGUaggcgaacggguuGCCGCG-CGGGCGCGuCGGg -3'
miRNA:   3'- gUUGUCG-------------UGGCGCuGCUCGUGU-GUCg -5'
23443 5' -54.7 NC_005259.1 + 62416 0.67 0.718471
Target:  5'- -cACGGCACC-CGuauCGGGUggagguucggACGCAGCa -3'
miRNA:   3'- guUGUCGUGGcGCu--GCUCG----------UGUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 4442 0.67 0.718471
Target:  5'- gAGCcGC-CCGUG-CGAGUGgGCAGCg -3'
miRNA:   3'- gUUGuCGuGGCGCuGCUCGUgUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 43587 0.67 0.718471
Target:  5'- gAGCAGCACuCG-GACGAGCAaguugacgAUGGCc -3'
miRNA:   3'- gUUGUCGUG-GCgCUGCUCGUg-------UGUCG- -5'
23443 5' -54.7 NC_005259.1 + 43945 0.68 0.707844
Target:  5'- uGACAGCGuCgGCGAUGGGCGgggcCGCcGCc -3'
miRNA:   3'- gUUGUCGU-GgCGCUGCUCGU----GUGuCG- -5'
23443 5' -54.7 NC_005259.1 + 42159 0.68 0.707844
Target:  5'- ---uGGUGCaCGCGACGAGCAgCACGu- -3'
miRNA:   3'- guugUCGUG-GCGCUGCUCGU-GUGUcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.