miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23444 5' -53.9 NC_005259.1 + 5040 0.66 0.839639
Target:  5'- -cGACAGCG-CCACGuugaUCACGgUCGa -3'
miRNA:   3'- aaCUGUCGCuGGUGCc---AGUGCaAGUg -5'
23444 5' -53.9 NC_005259.1 + 6740 0.66 0.830721
Target:  5'- --aGCAGUGcguuuCCGCuGGUCACG-UCACg -3'
miRNA:   3'- aacUGUCGCu----GGUG-CCAGUGCaAGUG- -5'
23444 5' -53.9 NC_005259.1 + 33192 0.66 0.821593
Target:  5'- cUGACuuGCaGACCAUGGaucagCACGUUCu- -3'
miRNA:   3'- aACUGu-CG-CUGGUGCCa----GUGCAAGug -5'
23444 5' -53.9 NC_005259.1 + 46559 0.66 0.802746
Target:  5'- -cGACcGCGcCUAUGGUCGCGgcgUCGa -3'
miRNA:   3'- aaCUGuCGCuGGUGCCAGUGCa--AGUg -5'
23444 5' -53.9 NC_005259.1 + 31637 0.69 0.677713
Target:  5'- gUUGuACuGCG-CCACGGUCAUGUagACc -3'
miRNA:   3'- -AAC-UGuCGCuGGUGCCAGUGCAagUG- -5'
23444 5' -53.9 NC_005259.1 + 1499 0.69 0.666739
Target:  5'- -aGGCAGUGuucGCCACGcUCACGcugUCACu -3'
miRNA:   3'- aaCUGUCGC---UGGUGCcAGUGCa--AGUG- -5'
23444 5' -53.9 NC_005259.1 + 21024 0.69 0.644706
Target:  5'- -cGGCAGCuGACCGaugacCGGcgCGCGUUCAa -3'
miRNA:   3'- aaCUGUCG-CUGGU-----GCCa-GUGCAAGUg -5'
23444 5' -53.9 NC_005259.1 + 2647 0.7 0.611593
Target:  5'- -gGGCGGUG-UCGCGGgCACGUUCAa -3'
miRNA:   3'- aaCUGUCGCuGGUGCCaGUGCAAGUg -5'
23444 5' -53.9 NC_005259.1 + 16787 0.7 0.600579
Target:  5'- -cGugGGuCGA-CGCGGUCGCGUacaUCGCg -3'
miRNA:   3'- aaCugUC-GCUgGUGCCAGUGCA---AGUG- -5'
23444 5' -53.9 NC_005259.1 + 34030 0.7 0.578641
Target:  5'- -cGGCGGCGugCGuCGG-CGCGUUCu- -3'
miRNA:   3'- aaCUGUCGCugGU-GCCaGUGCAAGug -5'
23444 5' -53.9 NC_005259.1 + 24956 0.7 0.578641
Target:  5'- cUGACuuuGCGACCACGGUUGCa----- -3'
miRNA:   3'- aACUGu--CGCUGGUGCCAGUGcaagug -5'
23444 5' -53.9 NC_005259.1 + 8332 0.71 0.533224
Target:  5'- -cGACGGCGAUCAgcCGGUCACGcugcugccgguaUCGCu -3'
miRNA:   3'- aaCUGUCGCUGGU--GCCAGUGCa-----------AGUG- -5'
23444 5' -53.9 NC_005259.1 + 5259 0.72 0.493271
Target:  5'- -cGGCGGgGACUACGGUCAgugucccguCGUUgACa -3'
miRNA:   3'- aaCUGUCgCUGGUGCCAGU---------GCAAgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.