miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23445 3' -61 NC_005259.1 + 20768 0.66 0.50239
Target:  5'- -gUCC-C-CCGCCcacCGGGUGGCGCGu -3'
miRNA:   3'- caAGGaGcGGCGGa--GUCCGCCGUGCc -5'
23445 3' -61 NC_005259.1 + 19528 0.66 0.50239
Target:  5'- -aUCCUCaCCGCCgugCAGGCcGaCGCGu -3'
miRNA:   3'- caAGGAGcGGCGGa--GUCCGcC-GUGCc -5'
23445 3' -61 NC_005259.1 + 27981 0.66 0.50239
Target:  5'- uGUUCCUC----CCUUGGGUGGUGCGGg -3'
miRNA:   3'- -CAAGGAGcggcGGAGUCCGCCGUGCC- -5'
23445 3' -61 NC_005259.1 + 42398 0.66 0.50239
Target:  5'- -gUCCaugagUCGUCGUaCUCGauGGCGGUGCGGc -3'
miRNA:   3'- caAGG-----AGCGGCG-GAGU--CCGCCGUGCC- -5'
23445 3' -61 NC_005259.1 + 15546 0.66 0.501408
Target:  5'- -gUCaCUgGCCGgugccacCCUCAGGUGGCcacccuCGGg -3'
miRNA:   3'- caAG-GAgCGGC-------GGAGUCCGCCGu-----GCC- -5'
23445 3' -61 NC_005259.1 + 68285 0.66 0.482926
Target:  5'- -gUCCUCGCC-CCauacaUCGGGaucgGGCGCGu -3'
miRNA:   3'- caAGGAGCGGcGG-----AGUCCg---CCGUGCc -5'
23445 3' -61 NC_005259.1 + 26506 0.66 0.482926
Target:  5'- ---gCUCGCCGCC-C-GGCGagaagaGCGCGGu -3'
miRNA:   3'- caagGAGCGGCGGaGuCCGC------CGUGCC- -5'
23445 3' -61 NC_005259.1 + 18971 0.66 0.482926
Target:  5'- --aCCUCGCCGCguacaUCGccCGGCACGa -3'
miRNA:   3'- caaGGAGCGGCGg----AGUccGCCGUGCc -5'
23445 3' -61 NC_005259.1 + 52147 0.66 0.463833
Target:  5'- --aCCUCGCCGaggCAGGCaGCGCc- -3'
miRNA:   3'- caaGGAGCGGCggaGUCCGcCGUGcc -5'
23445 3' -61 NC_005259.1 + 2004 0.66 0.463833
Target:  5'- --aCUaCGCgGCCaUCGGGUGGCGCa- -3'
miRNA:   3'- caaGGaGCGgCGG-AGUCCGCCGUGcc -5'
23445 3' -61 NC_005259.1 + 51404 0.67 0.448846
Target:  5'- uGUUCacaUCGCCgaggggccgguugagGUCUUGGGCGGgcCACGGg -3'
miRNA:   3'- -CAAGg--AGCGG---------------CGGAGUCCGCC--GUGCC- -5'
23445 3' -61 NC_005259.1 + 59298 0.67 0.445141
Target:  5'- --aCCUaCGCUGUCgu-GGCGGCAgCGGc -3'
miRNA:   3'- caaGGA-GCGGCGGaguCCGCCGU-GCC- -5'
23445 3' -61 NC_005259.1 + 64762 0.67 0.444218
Target:  5'- --gCCUCGCgacggugCGCCUC-GGCGGCcCGc -3'
miRNA:   3'- caaGGAGCG-------GCGGAGuCCGCCGuGCc -5'
23445 3' -61 NC_005259.1 + 34867 0.67 0.421488
Target:  5'- -gUCCUCGuCggugccggaccggggUGCCUCGGGCaGgACGGg -3'
miRNA:   3'- caAGGAGC-G---------------GCGGAGUCCGcCgUGCC- -5'
23445 3' -61 NC_005259.1 + 32545 0.67 0.408191
Target:  5'- --aCCUUgcuguugGCCGCC-CcGGCGaGCGCGGg -3'
miRNA:   3'- caaGGAG-------CGGCGGaGuCCGC-CGUGCC- -5'
23445 3' -61 NC_005259.1 + 51055 0.68 0.403818
Target:  5'- -aUCCUUGaaccaaucgagcagCGCCUC-GGUGGCAUGGc -3'
miRNA:   3'- caAGGAGCg-------------GCGGAGuCCGCCGUGCC- -5'
23445 3' -61 NC_005259.1 + 49434 0.68 0.40034
Target:  5'- --aCCggcgagCGCCGCCUUGGuCGGCAgcCGGa -3'
miRNA:   3'- caaGGa-----GCGGCGGAGUCcGCCGU--GCC- -5'
23445 3' -61 NC_005259.1 + 32082 0.68 0.383242
Target:  5'- cUUCCUCGuCCGagaaaC-CGGGCGGUGgCGGg -3'
miRNA:   3'- cAAGGAGC-GGCg----GaGUCCGCCGU-GCC- -5'
23445 3' -61 NC_005259.1 + 50209 0.68 0.378208
Target:  5'- -cUCaagCGCCGCCUCgucaaucucgauccgAGcGCgGGCGCGGa -3'
miRNA:   3'- caAGga-GCGGCGGAG---------------UC-CG-CCGUGCC- -5'
23445 3' -61 NC_005259.1 + 57176 0.68 0.374877
Target:  5'- -gUCCUCGCCGCCgUAGuuCGGCccGCGa -3'
miRNA:   3'- caAGGAGCGGCGGaGUCc-GCCG--UGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.