miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23445 3' -61 NC_005259.1 + 57176 0.68 0.374877
Target:  5'- -gUCCUCGCCGCCgUAGuuCGGCccGCGa -3'
miRNA:   3'- caAGGAGCGGCGGaGUCc-GCCG--UGCc -5'
23445 3' -61 NC_005259.1 + 53547 0.68 0.366636
Target:  5'- --cCCggUGUCGgCUCGGGCGGUGCGa -3'
miRNA:   3'- caaGGa-GCGGCgGAGUCCGCCGUGCc -5'
23445 3' -61 NC_005259.1 + 67204 0.69 0.341892
Target:  5'- --cCCUCGCCGCUgucGGCGGggucgaugccgacCACGGc -3'
miRNA:   3'- caaGGAGCGGCGGaguCCGCC-------------GUGCC- -5'
23445 3' -61 NC_005259.1 + 2475 0.69 0.334938
Target:  5'- aGUUCgUCGCuCGCCUCAauGGCcGCACc- -3'
miRNA:   3'- -CAAGgAGCG-GCGGAGU--CCGcCGUGcc -5'
23445 3' -61 NC_005259.1 + 54185 0.69 0.31251
Target:  5'- -aUCUUgGUgGcCCUCAGGCGGCggcccuugACGGg -3'
miRNA:   3'- caAGGAgCGgC-GGAGUCCGCCG--------UGCC- -5'
23445 3' -61 NC_005259.1 + 50421 0.7 0.291239
Target:  5'- --gCCUUGaCCGgCUCGGGCagcGGUGCGGg -3'
miRNA:   3'- caaGGAGC-GGCgGAGUCCG---CCGUGCC- -5'
23445 3' -61 NC_005259.1 + 2633 0.7 0.284405
Target:  5'- --aCCUCGCCGaacaaGGGCGGUgucGCGGg -3'
miRNA:   3'- caaGGAGCGGCggag-UCCGCCG---UGCC- -5'
23445 3' -61 NC_005259.1 + 27347 0.7 0.277698
Target:  5'- -aUCCaaUCGCCGUacugaUCGGGCuuggugcccGGCACGGu -3'
miRNA:   3'- caAGG--AGCGGCGg----AGUCCG---------CCGUGCC- -5'
23445 3' -61 NC_005259.1 + 3281 0.71 0.252131
Target:  5'- uUUCCcgUCGCCGCCUCGccggucccucGGCGaGCGCu- -3'
miRNA:   3'- cAAGG--AGCGGCGGAGU----------CCGC-CGUGcc -5'
23445 3' -61 NC_005259.1 + 50526 0.72 0.212083
Target:  5'- --aCCUCGacgcgcUCGCCUCGGGCGaggaaaccGCACGGc -3'
miRNA:   3'- caaGGAGC------GGCGGAGUCCGC--------CGUGCC- -5'
23445 3' -61 NC_005259.1 + 31887 0.72 0.206831
Target:  5'- --aCCUCGCCgGUCUCaAGGCccGGCGCGa -3'
miRNA:   3'- caaGGAGCGG-CGGAG-UCCG--CCGUGCc -5'
23445 3' -61 NC_005259.1 + 7415 0.72 0.206831
Target:  5'- -aUCCUCGUCGCCgUC-GGCGGUGCc- -3'
miRNA:   3'- caAGGAGCGGCGG-AGuCCGCCGUGcc -5'
23445 3' -61 NC_005259.1 + 15743 0.72 0.196662
Target:  5'- uUUCCUCGCCGCCUacgAGGcCGGgGaGGa -3'
miRNA:   3'- cAAGGAGCGGCGGAg--UCC-GCCgUgCC- -5'
23445 3' -61 NC_005259.1 + 52088 0.73 0.191257
Target:  5'- cUUCCUCaugaaCGUCUCAGGCGGCaaccugaGCGGc -3'
miRNA:   3'- cAAGGAGcg---GCGGAGUCCGCCG-------UGCC- -5'
23445 3' -61 NC_005259.1 + 15307 0.73 0.17763
Target:  5'- --aCCUCGCCGCC-CAcggucucgacGGCGGUACuGGu -3'
miRNA:   3'- caaGGAGCGGCGGaGU----------CCGCCGUG-CC- -5'
23445 3' -61 NC_005259.1 + 29462 0.73 0.173134
Target:  5'- --aCCUUGCCGCC-CGGcuCGGCAUGGa -3'
miRNA:   3'- caaGGAGCGGCGGaGUCc-GCCGUGCC- -5'
23445 3' -61 NC_005259.1 + 60138 0.74 0.164023
Target:  5'- -gUCCUgcgcggccuuggcCGCCGCCUCA-GCGGCcucACGGg -3'
miRNA:   3'- caAGGA-------------GCGGCGGAGUcCGCCG---UGCC- -5'
23445 3' -61 NC_005259.1 + 28921 0.74 0.156153
Target:  5'- -----aCGCCGCCUCagccagaagcAGGCGGCACGa -3'
miRNA:   3'- caaggaGCGGCGGAG----------UCCGCCGUGCc -5'
23445 3' -61 NC_005259.1 + 35202 0.75 0.130033
Target:  5'- --aCCgUGCCGCCUgAGGCGGCGaGGa -3'
miRNA:   3'- caaGGaGCGGCGGAgUCCGCCGUgCC- -5'
23445 3' -61 NC_005259.1 + 56024 0.81 0.045195
Target:  5'- --cCCUCGCCGggcgggacuuCCUCGGGCGGCuGCGGg -3'
miRNA:   3'- caaGGAGCGGC----------GGAGUCCGCCG-UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.