miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23445 5' -55.5 NC_005259.1 + 31089 0.66 0.738924
Target:  5'- cCCGaGCGCGUCGGGGAUCAguccgaugaguCGCc--- -3'
miRNA:   3'- uGGC-CGUGCGGUCUCUAGU-----------GCGaauu -5'
23445 5' -55.5 NC_005259.1 + 5417 0.66 0.728379
Target:  5'- cGCUGGC-CGCCAcgucGAGGUCuGCGCc--- -3'
miRNA:   3'- -UGGCCGuGCGGU----CUCUAG-UGCGaauu -5'
23445 5' -55.5 NC_005259.1 + 18136 0.66 0.717738
Target:  5'- cAUCGGCAagGCCAuggacGAGAUCGgGCUg-- -3'
miRNA:   3'- -UGGCCGUg-CGGU-----CUCUAGUgCGAauu -5'
23445 5' -55.5 NC_005259.1 + 12800 0.67 0.685351
Target:  5'- aGCCGGUACGCU----GUCGCGCg--- -3'
miRNA:   3'- -UGGCCGUGCGGucucUAGUGCGaauu -5'
23445 5' -55.5 NC_005259.1 + 14555 0.67 0.66239
Target:  5'- uCCGGCAgGCCgagcGGGGAccggcgaacaccaUCGCGCUg-- -3'
miRNA:   3'- uGGCCGUgCGG----UCUCU-------------AGUGCGAauu -5'
23445 5' -55.5 NC_005259.1 + 2114 0.67 0.652505
Target:  5'- aAUUGGCAcacgcuCGCC-GAGGUCACGCa--- -3'
miRNA:   3'- -UGGCCGU------GCGGuCUCUAGUGCGaauu -5'
23445 5' -55.5 NC_005259.1 + 27838 0.67 0.641505
Target:  5'- cGCgaGGUAgGCCGcGAGGUCGCGCg--- -3'
miRNA:   3'- -UGg-CCGUgCGGU-CUCUAGUGCGaauu -5'
23445 5' -55.5 NC_005259.1 + 67422 0.68 0.619489
Target:  5'- cAUCGGggUGCCGG-GcUCACGCUUGAg -3'
miRNA:   3'- -UGGCCguGCGGUCuCuAGUGCGAAUU- -5'
23445 5' -55.5 NC_005259.1 + 28011 0.68 0.619489
Target:  5'- gGCgGGguCGCCGGGGuugCGCGCg--- -3'
miRNA:   3'- -UGgCCguGCGGUCUCua-GUGCGaauu -5'
23445 5' -55.5 NC_005259.1 + 42971 0.68 0.597517
Target:  5'- -aCGGgAUGCCGGGGAUCAuCGUUg-- -3'
miRNA:   3'- ugGCCgUGCGGUCUCUAGU-GCGAauu -5'
23445 5' -55.5 NC_005259.1 + 37087 0.68 0.58657
Target:  5'- cACCGGCggugguguagacGCGUguGAuAUCGCGCUUGu -3'
miRNA:   3'- -UGGCCG------------UGCGguCUcUAGUGCGAAUu -5'
23445 5' -55.5 NC_005259.1 + 1885 0.69 0.5648
Target:  5'- aGCaGGC-CGCC-GAGAUCGCGCg--- -3'
miRNA:   3'- -UGgCCGuGCGGuCUCUAGUGCGaauu -5'
23445 5' -55.5 NC_005259.1 + 47034 0.69 0.553993
Target:  5'- uCCaGCAgGCCGGGGAUCuGCGCg--- -3'
miRNA:   3'- uGGcCGUgCGGUCUCUAG-UGCGaauu -5'
23445 5' -55.5 NC_005259.1 + 58407 0.69 0.552916
Target:  5'- cACCGGCgGCGaUCAGAGAUCcaccgggcagauuGCGCUg-- -3'
miRNA:   3'- -UGGCCG-UGC-GGUCUCUAG-------------UGCGAauu -5'
23445 5' -55.5 NC_005259.1 + 45864 0.69 0.521972
Target:  5'- gACCgGGCAUGCCGGGGAaCAgGCc--- -3'
miRNA:   3'- -UGG-CCGUGCGGUCUCUaGUgCGaauu -5'
23445 5' -55.5 NC_005259.1 + 29679 0.7 0.490694
Target:  5'- uGCCGGaCGCGCCGcaaucgagaccGAugccgaggcaccGAUCACGCUUAc -3'
miRNA:   3'- -UGGCC-GUGCGGU-----------CU------------CUAGUGCGAAUu -5'
23445 5' -55.5 NC_005259.1 + 30827 0.71 0.440625
Target:  5'- uCCGGCGCGCC-GAGGUCG-GCa--- -3'
miRNA:   3'- uGGCCGUGCGGuCUCUAGUgCGaauu -5'
23445 5' -55.5 NC_005259.1 + 63683 0.86 0.047299
Target:  5'- cACCGGCGCGCCGGGGAUCuGCGCc--- -3'
miRNA:   3'- -UGGCCGUGCGGUCUCUAG-UGCGaauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.