miRNA display CGI


Results 41 - 53 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23447 3' -51.2 NC_005259.1 + 43326 0.7 0.791408
Target:  5'- gGCCAccgccUUGGCgauggGCACGAUCACCuuuuCGa -3'
miRNA:   3'- -CGGUu----AACCG-----CGUGCUAGUGGuu--GCc -5'
23447 3' -51.2 NC_005259.1 + 26629 0.68 0.866972
Target:  5'- aGCCGAUaucgauggccUGGCGUGCGcUCGgcagguucggcgcacCCGGCGGc -3'
miRNA:   3'- -CGGUUA----------ACCGCGUGCuAGU---------------GGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 43034 0.68 0.863729
Target:  5'- cGCCGAgcaGGcCGC-CGAgcagcgaACCGACGGg -3'
miRNA:   3'- -CGGUUaa-CC-GCGuGCUag-----UGGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 19853 0.68 0.863729
Target:  5'- cGCuCGGUgUGGCGCucgcgcccgccGgGAUCGCCGACGc -3'
miRNA:   3'- -CG-GUUA-ACCGCG-----------UgCUAGUGGUUGCc -5'
23447 3' -51.2 NC_005259.1 + 5451 0.68 0.863729
Target:  5'- cGCCGAcagauCGCAUGAgcagCACCAAUGGc -3'
miRNA:   3'- -CGGUUaacc-GCGUGCUa---GUGGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 13734 0.69 0.85292
Target:  5'- uGCCGugaUGGCcCGCGAgauaugccaagaccUCGCCGACGa -3'
miRNA:   3'- -CGGUua-ACCGcGUGCU--------------AGUGGUUGCc -5'
23447 3' -51.2 NC_005259.1 + 64215 0.69 0.852072
Target:  5'- cGCCGGUcGGCaGCcCGGUaucggggucgauaGCCGACGGg -3'
miRNA:   3'- -CGGUUAaCCG-CGuGCUAg------------UGGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 4511 0.69 0.838195
Target:  5'- cGCCGGgagUGGCGCugcGCGG-CACCc-CGGu -3'
miRNA:   3'- -CGGUUa--ACCGCG---UGCUaGUGGuuGCC- -5'
23447 3' -51.2 NC_005259.1 + 66193 0.69 0.838195
Target:  5'- uGCCGGUgcaguacgGGUcagGCGCGGUCgcGCCGACGc -3'
miRNA:   3'- -CGGUUAa-------CCG---CGUGCUAG--UGGUUGCc -5'
23447 3' -51.2 NC_005259.1 + 22771 0.69 0.830141
Target:  5'- cGCCAA--GGCGCugGucacugugcaggugcUCACCGAgGGu -3'
miRNA:   3'- -CGGUUaaCCGCGugCu--------------AGUGGUUgCC- -5'
23447 3' -51.2 NC_005259.1 + 65175 0.7 0.8107
Target:  5'- cGCCGGgucaaGGCGCugguCGAUCAgauCCggUGGg -3'
miRNA:   3'- -CGGUUaa---CCGCGu---GCUAGU---GGuuGCC- -5'
23447 3' -51.2 NC_005259.1 + 44931 0.7 0.791408
Target:  5'- cGCUGAUcgGGUcCAUGG-CACCAGCGGg -3'
miRNA:   3'- -CGGUUAa-CCGcGUGCUaGUGGUUGCC- -5'
23447 3' -51.2 NC_005259.1 + 2110 0.78 0.367103
Target:  5'- gGCCAAUUGGCaCACGcUCGCCGA-GGu -3'
miRNA:   3'- -CGGUUAACCGcGUGCuAGUGGUUgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.