miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23448 3' -57.4 NC_005259.1 + 62947 0.66 0.687031
Target:  5'- gCUGCUg--CCGGGcaccgcuguCCUCGUCGUCu -3'
miRNA:   3'- aGACGGacaGGCUCuu-------GGAGCGGCAG- -5'
23448 3' -57.4 NC_005259.1 + 52585 0.66 0.67644
Target:  5'- --gGCCUGagcgucgCCGAGcACCagCGCCGUa -3'
miRNA:   3'- agaCGGACa------GGCUCuUGGa-GCGGCAg -5'
23448 3' -57.4 NC_005259.1 + 68741 0.66 0.644471
Target:  5'- --cGCUUG-CCGAGcucgaccccggcGACCUCGCCaUCg -3'
miRNA:   3'- agaCGGACaGGCUC------------UUGGAGCGGcAG- -5'
23448 3' -57.4 NC_005259.1 + 62533 0.66 0.63378
Target:  5'- cUCgGCCUcgacgGUCCGAGAgauaGCCUCaCCGg- -3'
miRNA:   3'- -AGaCGGA-----CAGGCUCU----UGGAGcGGCag -5'
23448 3' -57.4 NC_005259.1 + 38955 0.66 0.63378
Target:  5'- gCUGCCg--CCGAGAGCCU-GCaCGa- -3'
miRNA:   3'- aGACGGacaGGCUCUUGGAgCG-GCag -5'
23448 3' -57.4 NC_005259.1 + 18546 0.67 0.612404
Target:  5'- --aGCCcG-CCGAcGAACCaUCGCCGUa -3'
miRNA:   3'- agaCGGaCaGGCU-CUUGG-AGCGGCAg -5'
23448 3' -57.4 NC_005259.1 + 52037 0.67 0.601735
Target:  5'- aCUGCgcgCUGUCgccguCGAGGAUCgcgaCGCCGUCc -3'
miRNA:   3'- aGACG---GACAG-----GCUCUUGGa---GCGGCAG- -5'
23448 3' -57.4 NC_005259.1 + 43973 0.67 0.580481
Target:  5'- --cGCCUGaCCGAGGGCggUGCCGa- -3'
miRNA:   3'- agaCGGACaGGCUCUUGgaGCGGCag -5'
23448 3' -57.4 NC_005259.1 + 45807 0.67 0.56991
Target:  5'- cCUGCUUGggugcguagCCGGGGaugACCaUGCCGUCc -3'
miRNA:   3'- aGACGGACa--------GGCUCU---UGGaGCGGCAG- -5'
23448 3' -57.4 NC_005259.1 + 52136 0.68 0.559387
Target:  5'- --cGCC-GUCCG-GcACCUCGCCGa- -3'
miRNA:   3'- agaCGGaCAGGCuCuUGGAGCGGCag -5'
23448 3' -57.4 NC_005259.1 + 34712 0.69 0.497633
Target:  5'- aUCUGCCg--CgCGAGcGCCUCGUCGg- -3'
miRNA:   3'- -AGACGGacaG-GCUCuUGGAGCGGCag -5'
23448 3' -57.4 NC_005259.1 + 23891 0.69 0.477717
Target:  5'- gCUGCCgc-CCGAGccGCCgcgccCGCCGUCg -3'
miRNA:   3'- aGACGGacaGGCUCu-UGGa----GCGGCAG- -5'
23448 3' -57.4 NC_005259.1 + 18834 0.7 0.429753
Target:  5'- aUCUGCCcGg-UGAGggUCUCGCCGg- -3'
miRNA:   3'- -AGACGGaCagGCUCuuGGAGCGGCag -5'
23448 3' -57.4 NC_005259.1 + 14146 0.71 0.367629
Target:  5'- -gUGCCUGUgCGAGcgcgucgugugGAUCUCGCCGg- -3'
miRNA:   3'- agACGGACAgGCUC-----------UUGGAGCGGCag -5'
23448 3' -57.4 NC_005259.1 + 64178 0.72 0.3303
Target:  5'- aCUGUCUGUgcgUCGGGAucuuccucgaugucgACCUCGCCGgUCg -3'
miRNA:   3'- aGACGGACA---GGCUCU---------------UGGAGCGGC-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.