miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23449 3' -54.2 NC_005259.1 + 44130 0.69 0.665915
Target:  5'- uGUAGcUGUGCGUugagCGAGGUgaACGUGCg -3'
miRNA:   3'- -CGUCaACGCGCA----GCUCCAa-UGCGCGg -5'
23449 3' -54.2 NC_005259.1 + 27835 0.74 0.417933
Target:  5'- ----cUGCGCGagguaggccgCGAGGUcGCGCGCCg -3'
miRNA:   3'- cgucaACGCGCa---------GCUCCAaUGCGCGG- -5'
23449 3' -54.2 NC_005259.1 + 51667 0.73 0.446282
Target:  5'- cGCGG--GCGCGUCGGGcacggGCGCGCg -3'
miRNA:   3'- -CGUCaaCGCGCAGCUCcaa--UGCGCGg -5'
23449 3' -54.2 NC_005259.1 + 27999 0.73 0.455968
Target:  5'- uGCGGgugccgggGCGgGgucgcCGGGGUUGCGCGCg -3'
miRNA:   3'- -CGUCaa------CGCgCa----GCUCCAAUGCGCGg -5'
23449 3' -54.2 NC_005259.1 + 32169 0.72 0.49579
Target:  5'- cGUAGUaGCGCGU-GAGcucgcUGCGCGCCu -3'
miRNA:   3'- -CGUCAaCGCGCAgCUCca---AUGCGCGG- -5'
23449 3' -54.2 NC_005259.1 + 412 0.71 0.568867
Target:  5'- aGCAGcgcgUGCcCGUCGAGGaugACGCaCCg -3'
miRNA:   3'- -CGUCa---ACGcGCAGCUCCaa-UGCGcGG- -5'
23449 3' -54.2 NC_005259.1 + 1885 0.7 0.629169
Target:  5'- aGCAGgccgccgagaucGCGCGagcugcCGAGGaaGCGCGCCg -3'
miRNA:   3'- -CGUCaa----------CGCGCa-----GCUCCaaUGCGCGG- -5'
23449 3' -54.2 NC_005259.1 + 13631 0.7 0.633497
Target:  5'- uGCGGgccGCucaaCGUCGAcGGcUACGCGCCc -3'
miRNA:   3'- -CGUCaa-CGc---GCAGCU-CCaAUGCGCGG- -5'
23449 3' -54.2 NC_005259.1 + 14854 0.7 0.633497
Target:  5'- aCGGUcGUGCucgCGAGGUU-CGCGCUg -3'
miRNA:   3'- cGUCAaCGCGca-GCUCCAAuGCGCGG- -5'
23449 3' -54.2 NC_005259.1 + 32321 0.7 0.644318
Target:  5'- cGCAGUgcccgccaauugUGCGCGgccaucaacgCGAGGUUGaugacCGCCg -3'
miRNA:   3'- -CGUCA------------ACGCGCa---------GCUCCAAUgc---GCGG- -5'
23449 3' -54.2 NC_005259.1 + 45172 0.74 0.381894
Target:  5'- gGCcuuGUUGCGCGcCGAGGUca-GCGCg -3'
miRNA:   3'- -CGu--CAACGCGCaGCUCCAaugCGCGg -5'
23449 3' -54.2 NC_005259.1 + 52043 0.69 0.676673
Target:  5'- cGCuGUcGC-CGUCGAGGaucGCGaCGCCg -3'
miRNA:   3'- -CGuCAaCGcGCAGCUCCaa-UGC-GCGG- -5'
23449 3' -54.2 NC_005259.1 + 63681 0.69 0.68739
Target:  5'- gGCAccgGCGCGcCGGGGaucUGCGCCu -3'
miRNA:   3'- -CGUcaaCGCGCaGCUCCaauGCGCGG- -5'
23449 3' -54.2 NC_005259.1 + 38846 0.69 0.698056
Target:  5'- uGCuGUaGCGCGuucUCGAuGUUcgACGCGCCc -3'
miRNA:   3'- -CGuCAaCGCGC---AGCUcCAA--UGCGCGG- -5'
23449 3' -54.2 NC_005259.1 + 64261 0.68 0.719191
Target:  5'- cGUGG-UGCGCGagcaCGAGuucGCGCGCCa -3'
miRNA:   3'- -CGUCaACGCGCa---GCUCcaaUGCGCGG- -5'
23449 3' -54.2 NC_005259.1 + 58543 0.68 0.719191
Target:  5'- ----cUGCcCGUCGAGGUUACG-GCUc -3'
miRNA:   3'- cgucaACGcGCAGCUCCAAUGCgCGG- -5'
23449 3' -54.2 NC_005259.1 + 10655 0.68 0.719191
Target:  5'- cGCGGUcgaGCGCcUUGAGGaUGgucUGCGCCg -3'
miRNA:   3'- -CGUCAa--CGCGcAGCUCCaAU---GCGCGG- -5'
23449 3' -54.2 NC_005259.1 + 56789 0.68 0.736898
Target:  5'- cGCcGUUGC-CGaugaacagaUCGGGGUcgguggccacccauUGCGCGCCu -3'
miRNA:   3'- -CGuCAACGcGC---------AGCUCCA--------------AUGCGCGG- -5'
23449 3' -54.2 NC_005259.1 + 46914 0.68 0.760375
Target:  5'- aGCAGUccgcgUGCGcCGcCGAGcUUGCcCGCCg -3'
miRNA:   3'- -CGUCA-----ACGC-GCaGCUCcAAUGcGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.