miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23449	5'	-55.4	NC_005259.1	+	49991	0.66	0.755354
	Target:  5'- cGGaUCGCGUGCGgacggcuGCCCUcgugcacgGGCGCUGc -3' miRNA:   3'- aCCcAGUGCACGU-------UGGGG--------UUGCGAUa -5'
23449	5'	-55.4	NC_005259.1	+	62003	0.66	0.703709
	Target:  5'- aUGGG-CAcCGUGCGGuguaCCCGcucGCGCUGUg -3' miRNA:   3'- -ACCCaGU-GCACGUUg---GGGU---UGCGAUA- -5'
23449	5'	-55.4	NC_005259.1	+	66206	0.67	0.682074
	Target:  5'- cGGGUCAgGcGCGgucGCgCCGACGCa-- -3' miRNA:   3'- aCCCAGUgCaCGU---UGgGGUUGCGaua -5'
23449	5'	-55.4	NC_005259.1	+	33120	0.67	0.66025
	Target:  5'- aGGGcCACGcgGCAGCCgCC-GCGCg-- -3' miRNA:   3'- aCCCaGUGCa-CGUUGG-GGuUGCGaua -5'
23449	5'	-55.4	NC_005259.1	+	14675	0.67	0.656966
	Target:  5'- cGGGcCGCGUGCAcucgauucugcucgACCCCcgcCGCg-- -3' miRNA:   3'- aCCCaGUGCACGU--------------UGGGGuu-GCGaua -5'
23449	5'	-55.4	NC_005259.1	+	40835	0.67	0.649294
	Target:  5'- aUGGGcCGCGUGUugAugCCCuGCGCc-- -3' miRNA:   3'- -ACCCaGUGCACG--UugGGGuUGCGaua -5'
23449	5'	-55.4	NC_005259.1	+	48476	0.71	0.457925
	Target:  5'- cGGGUCGCGUcgGCcuguuCCUCGACGCg-- -3' miRNA:   3'- aCCCAGUGCA--CGuu---GGGGUUGCGaua -5'
23449	5'	-55.4	NC_005259.1	+	23741	0.72	0.391594
	Target:  5'- gUGGG--ACG-GCGACCCCGACGCc-- -3' miRNA:   3'- -ACCCagUGCaCGUUGGGGUUGCGaua -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home