miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2345 3' -56.8 NC_001416.1 + 7914 0.76 0.142076
Target:  5'- uGGCUUGGAcggGGC-GUACCGCCUGcCg -3'
miRNA:   3'- gCCGGACUUa--CCGaCAUGGCGGACuG- -5'
2345 3' -56.8 NC_001416.1 + 16790 0.69 0.39149
Target:  5'- -uGCCUu--UGGCUGUACCaGCCgggGGCa -3'
miRNA:   3'- gcCGGAcuuACCGACAUGG-CGGa--CUG- -5'
2345 3' -56.8 NC_001416.1 + 21815 0.66 0.596647
Target:  5'- aCGGCUguaccggacaaUGAGUGaCUGUgGCUGCcCUGACu -3'
miRNA:   3'- -GCCGG-----------ACUUACcGACA-UGGCG-GACUG- -5'
2345 3' -56.8 NC_001416.1 + 40733 0.67 0.531243
Target:  5'- gGGUCUGGAaggauuuGCUGUACUGCgUGAa -3'
miRNA:   3'- gCCGGACUUac-----CGACAUGGCGgACUg -5'
2345 3' -56.8 NC_001416.1 + 40397 0.72 0.25733
Target:  5'- gCGGCCUGAuuuaugcUGGUuacUGUugCGCCUGuuaGCg -3'
miRNA:   3'- -GCCGGACUu------ACCG---ACAugGCGGAC---UG- -5'
2345 3' -56.8 NC_001416.1 + 12756 1.1 0.000441
Target:  5'- gCGGCCUGAAUGGCUGUACCGCCUGACg -3'
miRNA:   3'- -GCCGGACUUACCGACAUGGCGGACUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.