Results 1 - 20 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23450 | 3' | -58.4 | NC_005259.1 | + | 7236 | 0.66 | 0.61623 |
Target: 5'- -aCGACGGCAGccgcGCCGGUgucgaguGCGCCa- -3' miRNA: 3'- aaGUUGCCGUUc---UGGCCGu------CGCGGcc -5' |
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23450 | 3' | -58.4 | NC_005259.1 | + | 6435 | 0.66 | 0.61623 |
Target: 5'- -cCGAuguCGGCAccgucgcgcuGAUCGGCAGCgucGCCGGu -3' miRNA: 3'- aaGUU---GCCGUu---------CUGGCCGUCG---CGGCC- -5' |
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23450 | 3' | -58.4 | NC_005259.1 | + | 3302 | 0.66 | 0.615164 |
Target: 5'- gUCccuCGGCGAGcGCUGcGUcgacgugAGCGCCGGg -3' miRNA: 3'- aAGuu-GCCGUUC-UGGC-CG-------UCGCGGCC- -5' |
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23450 | 3' | -58.4 | NC_005259.1 | + | 15324 | 0.66 | 0.60557 |
Target: 5'- cUCGACGGCGGuACUGGUaaaGGgGCCa- -3' miRNA: 3'- aAGUUGCCGUUcUGGCCG---UCgCGGcc -5' |
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23450 | 3' | -58.4 | NC_005259.1 | + | 63666 | 0.66 | 0.60557 |
Target: 5'- -aCGcCGGaCAccucgGGcACCGGC-GCGCCGGg -3' miRNA: 3'- aaGUuGCC-GU-----UC-UGGCCGuCGCGGCC- -5' |
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23450 | 3' | -58.4 | NC_005259.1 | + | 8991 | 0.66 | 0.60557 |
Target: 5'- -cCAGCGGCGA---CGGCAGcCGCCu- -3' miRNA: 3'- aaGUUGCCGUUcugGCCGUC-GCGGcc -5' |
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23450 | 3' | -58.4 | NC_005259.1 | + | 29958 | 0.66 | 0.60557 |
Target: 5'- -gCGGCuGGUggGGCgGGCGGUGaCCGu -3' miRNA: 3'- aaGUUG-CCGuuCUGgCCGUCGC-GGCc -5' |
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23450 | 3' | -58.4 | NC_005259.1 | + | 13447 | 0.66 | 0.60557 |
Target: 5'- -----aGGCGuGACCGucggcGCGGCGCUGGu -3' miRNA: 3'- aaguugCCGUuCUGGC-----CGUCGCGGCC- -5' |
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23450 | 3' | -58.4 | NC_005259.1 | + | 8385 | 0.66 | 0.60557 |
Target: 5'- -gCAuCGGCGAGAgccUCGGCGa-GCCGGg -3' miRNA: 3'- aaGUuGCCGUUCU---GGCCGUcgCGGCC- -5' |
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23450 | 3' | -58.4 | NC_005259.1 | + | 31072 | 0.66 | 0.594932 |
Target: 5'- aUCGGguCGGCGAGGuucCCGaGC-GCGUCGGg -3' miRNA: 3'- aAGUU--GCCGUUCU---GGC-CGuCGCGGCC- -5' |
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23450 | 3' | -58.4 | NC_005259.1 | + | 33906 | 0.66 | 0.594932 |
Target: 5'- -gCGACGGgcCGAGACCGGCcacGGUGCg-- -3' miRNA: 3'- aaGUUGCC--GUUCUGGCCG---UCGCGgcc -5' |
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23450 | 3' | -58.4 | NC_005259.1 | + | 3067 | 0.66 | 0.59387 |
Target: 5'- gUCGACGGgcCGAGGCCGacaagagagccgcGCAGCGaugagCGGg -3' miRNA: 3'- aAGUUGCC--GUUCUGGC-------------CGUCGCg----GCC- -5' |
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23450 | 3' | -58.4 | NC_005259.1 | + | 62744 | 0.66 | 0.584323 |
Target: 5'- -cCGGCGGCAGuACgCGGUGGUacucguggGCCGGa -3' miRNA: 3'- aaGUUGCCGUUcUG-GCCGUCG--------CGGCC- -5' |
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23450 | 3' | -58.4 | NC_005259.1 | + | 44780 | 0.66 | 0.584323 |
Target: 5'- aUCGGCGGuCGAGaacagacgcucGCCGGUGGC-CUGGc -3' miRNA: 3'- aAGUUGCC-GUUC-----------UGGCCGUCGcGGCC- -5' |
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23450 | 3' | -58.4 | NC_005259.1 | + | 64779 | 0.66 | 0.584323 |
Target: 5'- cUCGGCGGCccgcugcGACUGGCuguGUGCCu- -3' miRNA: 3'- aAGUUGCCGuu-----CUGGCCGu--CGCGGcc -5' |
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23450 | 3' | -58.4 | NC_005259.1 | + | 10326 | 0.66 | 0.584323 |
Target: 5'- aUCGggcuCGGCGacGGGCuCGGCGGCaGCgGGc -3' miRNA: 3'- aAGUu---GCCGU--UCUG-GCCGUCG-CGgCC- -5' |
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23450 | 3' | -58.4 | NC_005259.1 | + | 42507 | 0.66 | 0.584323 |
Target: 5'- -cCGGCGGUguGGCCaGCAGcCGuCCGGc -3' miRNA: 3'- aaGUUGCCGuuCUGGcCGUC-GC-GGCC- -5' |
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23450 | 3' | -58.4 | NC_005259.1 | + | 50396 | 0.66 | 0.573752 |
Target: 5'- gUC-GCGGCuc-GCCGaGC-GCGCCGGu -3' miRNA: 3'- aAGuUGCCGuucUGGC-CGuCGCGGCC- -5' |
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23450 | 3' | -58.4 | NC_005259.1 | + | 8217 | 0.66 | 0.573752 |
Target: 5'- -gCAACaGCGAgcGugCGGUGGUGCCGa -3' miRNA: 3'- aaGUUGcCGUU--CugGCCGUCGCGGCc -5' |
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23450 | 3' | -58.4 | NC_005259.1 | + | 6312 | 0.66 | 0.572697 |
Target: 5'- gUCGACGGCAuGACCuaccuugccgGGCAcacccacgacgggGUGCCGu -3' miRNA: 3'- aAGUUGCCGUuCUGG----------CCGU-------------CGCGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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