miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23450 3' -58.4 NC_005259.1 + 7236 0.66 0.61623
Target:  5'- -aCGACGGCAGccgcGCCGGUgucgaguGCGCCa- -3'
miRNA:   3'- aaGUUGCCGUUc---UGGCCGu------CGCGGcc -5'
23450 3' -58.4 NC_005259.1 + 6435 0.66 0.61623
Target:  5'- -cCGAuguCGGCAccgucgcgcuGAUCGGCAGCgucGCCGGu -3'
miRNA:   3'- aaGUU---GCCGUu---------CUGGCCGUCG---CGGCC- -5'
23450 3' -58.4 NC_005259.1 + 3302 0.66 0.615164
Target:  5'- gUCccuCGGCGAGcGCUGcGUcgacgugAGCGCCGGg -3'
miRNA:   3'- aAGuu-GCCGUUC-UGGC-CG-------UCGCGGCC- -5'
23450 3' -58.4 NC_005259.1 + 63666 0.66 0.60557
Target:  5'- -aCGcCGGaCAccucgGGcACCGGC-GCGCCGGg -3'
miRNA:   3'- aaGUuGCC-GU-----UC-UGGCCGuCGCGGCC- -5'
23450 3' -58.4 NC_005259.1 + 8991 0.66 0.60557
Target:  5'- -cCAGCGGCGA---CGGCAGcCGCCu- -3'
miRNA:   3'- aaGUUGCCGUUcugGCCGUC-GCGGcc -5'
23450 3' -58.4 NC_005259.1 + 29958 0.66 0.60557
Target:  5'- -gCGGCuGGUggGGCgGGCGGUGaCCGu -3'
miRNA:   3'- aaGUUG-CCGuuCUGgCCGUCGC-GGCc -5'
23450 3' -58.4 NC_005259.1 + 13447 0.66 0.60557
Target:  5'- -----aGGCGuGACCGucggcGCGGCGCUGGu -3'
miRNA:   3'- aaguugCCGUuCUGGC-----CGUCGCGGCC- -5'
23450 3' -58.4 NC_005259.1 + 8385 0.66 0.60557
Target:  5'- -gCAuCGGCGAGAgccUCGGCGa-GCCGGg -3'
miRNA:   3'- aaGUuGCCGUUCU---GGCCGUcgCGGCC- -5'
23450 3' -58.4 NC_005259.1 + 15324 0.66 0.60557
Target:  5'- cUCGACGGCGGuACUGGUaaaGGgGCCa- -3'
miRNA:   3'- aAGUUGCCGUUcUGGCCG---UCgCGGcc -5'
23450 3' -58.4 NC_005259.1 + 31072 0.66 0.594932
Target:  5'- aUCGGguCGGCGAGGuucCCGaGC-GCGUCGGg -3'
miRNA:   3'- aAGUU--GCCGUUCU---GGC-CGuCGCGGCC- -5'
23450 3' -58.4 NC_005259.1 + 33906 0.66 0.594932
Target:  5'- -gCGACGGgcCGAGACCGGCcacGGUGCg-- -3'
miRNA:   3'- aaGUUGCC--GUUCUGGCCG---UCGCGgcc -5'
23450 3' -58.4 NC_005259.1 + 3067 0.66 0.59387
Target:  5'- gUCGACGGgcCGAGGCCGacaagagagccgcGCAGCGaugagCGGg -3'
miRNA:   3'- aAGUUGCC--GUUCUGGC-------------CGUCGCg----GCC- -5'
23450 3' -58.4 NC_005259.1 + 62744 0.66 0.584323
Target:  5'- -cCGGCGGCAGuACgCGGUGGUacucguggGCCGGa -3'
miRNA:   3'- aaGUUGCCGUUcUG-GCCGUCG--------CGGCC- -5'
23450 3' -58.4 NC_005259.1 + 42507 0.66 0.584323
Target:  5'- -cCGGCGGUguGGCCaGCAGcCGuCCGGc -3'
miRNA:   3'- aaGUUGCCGuuCUGGcCGUC-GC-GGCC- -5'
23450 3' -58.4 NC_005259.1 + 44780 0.66 0.584323
Target:  5'- aUCGGCGGuCGAGaacagacgcucGCCGGUGGC-CUGGc -3'
miRNA:   3'- aAGUUGCC-GUUC-----------UGGCCGUCGcGGCC- -5'
23450 3' -58.4 NC_005259.1 + 10326 0.66 0.584323
Target:  5'- aUCGggcuCGGCGacGGGCuCGGCGGCaGCgGGc -3'
miRNA:   3'- aAGUu---GCCGU--UCUG-GCCGUCG-CGgCC- -5'
23450 3' -58.4 NC_005259.1 + 64779 0.66 0.584323
Target:  5'- cUCGGCGGCccgcugcGACUGGCuguGUGCCu- -3'
miRNA:   3'- aAGUUGCCGuu-----CUGGCCGu--CGCGGcc -5'
23450 3' -58.4 NC_005259.1 + 50396 0.66 0.573752
Target:  5'- gUC-GCGGCuc-GCCGaGC-GCGCCGGu -3'
miRNA:   3'- aAGuUGCCGuucUGGC-CGuCGCGGCC- -5'
23450 3' -58.4 NC_005259.1 + 8217 0.66 0.573752
Target:  5'- -gCAACaGCGAgcGugCGGUGGUGCCGa -3'
miRNA:   3'- aaGUUGcCGUU--CugGCCGUCGCGGCc -5'
23450 3' -58.4 NC_005259.1 + 6312 0.66 0.572697
Target:  5'- gUCGACGGCAuGACCuaccuugccgGGCAcacccacgacgggGUGCCGu -3'
miRNA:   3'- aAGUUGCCGUuCUGG----------CCGU-------------CGCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.