miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23450 3' -58.4 NC_005259.1 + 19384 0.66 0.563225
Target:  5'- aUCAcCGGCcccaaCGGCAGCGUCGa -3'
miRNA:   3'- aAGUuGCCGuucugGCCGUCGCGGCc -5'
23450 3' -58.4 NC_005259.1 + 63841 0.66 0.563225
Target:  5'- uUUCGA-GGCAAGcgcguACCGGCgaGGUGgCCGGc -3'
miRNA:   3'- -AAGUUgCCGUUC-----UGGCCG--UCGC-GGCC- -5'
23450 3' -58.4 NC_005259.1 + 41235 0.66 0.563225
Target:  5'- cUCGGCGGUGAcGAuCCGGU-GCGCCu- -3'
miRNA:   3'- aAGUUGCCGUU-CU-GGCCGuCGCGGcc -5'
23450 3' -58.4 NC_005259.1 + 26403 0.66 0.563225
Target:  5'- -cCGAC-GCcGGGCgCGGCGGUGCCGc -3'
miRNA:   3'- aaGUUGcCGuUCUG-GCCGUCGCGGCc -5'
23450 3' -58.4 NC_005259.1 + 23656 0.66 0.563225
Target:  5'- -cCGACGGCGAcGGCUGGac-CGCCGa -3'
miRNA:   3'- aaGUUGCCGUU-CUGGCCgucGCGGCc -5'
23450 3' -58.4 NC_005259.1 + 59112 0.67 0.556934
Target:  5'- gUCAgcacgcGCGGCAucgagcagagcgucgAGcUCGGCAGCgguGCCGGg -3'
miRNA:   3'- aAGU------UGCCGU---------------UCuGGCCGUCG---CGGCC- -5'
23450 3' -58.4 NC_005259.1 + 51101 0.67 0.551707
Target:  5'- -aCGAgGGCGGGAucuguCCGGCAGgccaucagaucacCGUCGGg -3'
miRNA:   3'- aaGUUgCCGUUCU-----GGCCGUC-------------GCGGCC- -5'
23450 3' -58.4 NC_005259.1 + 68130 0.67 0.542336
Target:  5'- -gCAGCGGCGAGcUCGGCAggauGCGCg-- -3'
miRNA:   3'- aaGUUGCCGUUCuGGCCGU----CGCGgcc -5'
23450 3' -58.4 NC_005259.1 + 40892 0.67 0.542336
Target:  5'- -aCcgUGGCGGGGUCGGCAGCGUCc- -3'
miRNA:   3'- aaGuuGCCGUUCUGGCCGUCGCGGcc -5'
23450 3' -58.4 NC_005259.1 + 4481 0.67 0.531987
Target:  5'- aUCGGCGGU-GGACCauGGUGaucgccaccGCGCCGGg -3'
miRNA:   3'- aAGUUGCCGuUCUGG--CCGU---------CGCGGCC- -5'
23450 3' -58.4 NC_005259.1 + 2098 0.67 0.531987
Target:  5'- uUUCAuCGGCGAGGCCaauuGGCAcacgcuCGCCGa -3'
miRNA:   3'- -AAGUuGCCGUUCUGG----CCGUc-----GCGGCc -5'
23450 3' -58.4 NC_005259.1 + 48437 0.67 0.528897
Target:  5'- -cCGAgGcGCGAGGCagCGGCAgcgcguuccaccgcGCGCCGGg -3'
miRNA:   3'- aaGUUgC-CGUUCUG--GCCGU--------------CGCGGCC- -5'
23450 3' -58.4 NC_005259.1 + 26814 0.67 0.511512
Target:  5'- ----uUGGCcGGuACCGGCgguGGUGCCGGg -3'
miRNA:   3'- aaguuGCCGuUC-UGGCCG---UCGCGGCC- -5'
23450 3' -58.4 NC_005259.1 + 48050 0.67 0.511512
Target:  5'- -cCggUGGCcacGGCgGGUAGCGCCGc -3'
miRNA:   3'- aaGuuGCCGuu-CUGgCCGUCGCGGCc -5'
23450 3' -58.4 NC_005259.1 + 57130 0.67 0.511512
Target:  5'- -cCAuCGGCGGGACCGaGCAGUagugGCCc- -3'
miRNA:   3'- aaGUuGCCGUUCUGGC-CGUCG----CGGcc -5'
23450 3' -58.4 NC_005259.1 + 45857 0.67 0.501396
Target:  5'- ----cCGGUggGACCgGGCA-UGCCGGg -3'
miRNA:   3'- aaguuGCCGuuCUGG-CCGUcGCGGCC- -5'
23450 3' -58.4 NC_005259.1 + 8331 0.67 0.501396
Target:  5'- -cCGACGGCGAucaGCCGGUcacgcuGCuGCCGGu -3'
miRNA:   3'- aaGUUGCCGUUc--UGGCCGu-----CG-CGGCC- -5'
23450 3' -58.4 NC_005259.1 + 26014 0.68 0.495369
Target:  5'- -gCAGCGGgAuGGCCGcaagcggguuggccaGCAGCGCCGc -3'
miRNA:   3'- aaGUUGCCgUuCUGGC---------------CGUCGCGGCc -5'
23450 3' -58.4 NC_005259.1 + 11001 0.68 0.490372
Target:  5'- -gCAACGGCAccgcgccGGACgcgccgaGGCAGgaguuCGCCGGg -3'
miRNA:   3'- aaGUUGCCGU-------UCUGg------CCGUC-----GCGGCC- -5'
23450 3' -58.4 NC_005259.1 + 61028 0.68 0.481437
Target:  5'- cUCGgugGCGGCGAggucgaccGACgGGCGGCucaccuuguGCCGGg -3'
miRNA:   3'- aAGU---UGCCGUU--------CUGgCCGUCG---------CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.