miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23450 5' -55.2 NC_005259.1 + 47995 0.66 0.766583
Target:  5'- cAGCgCAAgACCGgcuUGUgUGAGCUGCUGCa -3'
miRNA:   3'- -UUG-GUUgUGGCa--ACG-GCUCGGUGACG- -5'
23450 5' -55.2 NC_005259.1 + 37722 0.66 0.766583
Target:  5'- aGACCcgaGGCACCGccGCCGAcgaGCUGCu -3'
miRNA:   3'- -UUGG---UUGUGGCaaCGGCUcggUGACG- -5'
23450 5' -55.2 NC_005259.1 + 65164 0.66 0.766583
Target:  5'- gGGCCAugGCCc--GCCGGGUCAagGCg -3'
miRNA:   3'- -UUGGUugUGGcaaCGGCUCGGUgaCG- -5'
23450 5' -55.2 NC_005259.1 + 26402 0.66 0.766583
Target:  5'- -uCCGACGCCGggcgcgGCgGuGCCGCcGUa -3'
miRNA:   3'- uuGGUUGUGGCaa----CGgCuCGGUGaCG- -5'
23450 5' -55.2 NC_005259.1 + 23496 0.66 0.766583
Target:  5'- cGCCAugACCaagGCCGAGCU-CaGCg -3'
miRNA:   3'- uUGGUugUGGcaaCGGCUCGGuGaCG- -5'
23450 5' -55.2 NC_005259.1 + 764 0.66 0.756382
Target:  5'- uACCGcgucCACCGc-GCCGAgGCgGCUGCc -3'
miRNA:   3'- uUGGUu---GUGGCaaCGGCU-CGgUGACG- -5'
23450 5' -55.2 NC_005259.1 + 8963 0.66 0.756382
Target:  5'- gGACgGGCACCG-UGCCGGgacguagguGCCAgCgGCg -3'
miRNA:   3'- -UUGgUUGUGGCaACGGCU---------CGGU-GaCG- -5'
23450 5' -55.2 NC_005259.1 + 37414 0.66 0.756382
Target:  5'- uGuuGACGCCGcccGCCGuGCCAUUGg -3'
miRNA:   3'- uUggUUGUGGCaa-CGGCuCGGUGACg -5'
23450 5' -55.2 NC_005259.1 + 26038 0.66 0.756382
Target:  5'- uGGCCAGCAgCGccGCCGGguuggccauGCCGCcGCc -3'
miRNA:   3'- -UUGGUUGUgGCaaCGGCU---------CGGUGaCG- -5'
23450 5' -55.2 NC_005259.1 + 26138 0.66 0.755354
Target:  5'- -uCCGACGCCGccgagGCCGAGCaGCccgaaaaUGCc -3'
miRNA:   3'- uuGGUUGUGGCaa---CGGCUCGgUG-------ACG- -5'
23450 5' -55.2 NC_005259.1 + 29693 0.66 0.746054
Target:  5'- cAAUCGAgACCGaUGCCGAGgCACc-- -3'
miRNA:   3'- -UUGGUUgUGGCaACGGCUCgGUGacg -5'
23450 5' -55.2 NC_005259.1 + 5716 0.66 0.746054
Target:  5'- aGGCCAGCGCCGgacGgCG-GCCAUUcucGCg -3'
miRNA:   3'- -UUGGUUGUGGCaa-CgGCuCGGUGA---CG- -5'
23450 5' -55.2 NC_005259.1 + 51568 0.66 0.746054
Target:  5'- gGGCCAACgauccggcaGCCGgUGCCGAcacaGCCGCa-- -3'
miRNA:   3'- -UUGGUUG---------UGGCaACGGCU----CGGUGacg -5'
23450 5' -55.2 NC_005259.1 + 48538 0.66 0.735612
Target:  5'- -cUCGGCGCUGUcGCCGGucuuguuguacGCgCGCUGCg -3'
miRNA:   3'- uuGGUUGUGGCAaCGGCU-----------CG-GUGACG- -5'
23450 5' -55.2 NC_005259.1 + 37251 0.66 0.735612
Target:  5'- uGGCUGcCGCCGUUGCCaggcuugaGGCCGCccgGCa -3'
miRNA:   3'- -UUGGUuGUGGCAACGGc-------UCGGUGa--CG- -5'
23450 5' -55.2 NC_005259.1 + 36857 0.66 0.735612
Target:  5'- cGCCcgcuGCGCCGUUGCUGGcaCCGCccGCg -3'
miRNA:   3'- uUGGu---UGUGGCAACGGCUc-GGUGa-CG- -5'
23450 5' -55.2 NC_005259.1 + 19247 0.66 0.725066
Target:  5'- uGAUCgAugGCCGccUGCCGGGCCGCc-- -3'
miRNA:   3'- -UUGG-UugUGGCa-ACGGCUCGGUGacg -5'
23450 5' -55.2 NC_005259.1 + 18397 0.66 0.725066
Target:  5'- aGACgAGCACCuc-GCCGAGCC-C-GCg -3'
miRNA:   3'- -UUGgUUGUGGcaaCGGCUCGGuGaCG- -5'
23450 5' -55.2 NC_005259.1 + 11639 0.66 0.724006
Target:  5'- uAACCAuguauaucaagauAUACCGUggcgGCCacaucGAGCCACcGCc -3'
miRNA:   3'- -UUGGU-------------UGUGGCAa---CGG-----CUCGGUGaCG- -5'
23450 5' -55.2 NC_005259.1 + 47942 0.67 0.714428
Target:  5'- aAGCCGaugACGgCGgUGCCGAugGCCGCcGCg -3'
miRNA:   3'- -UUGGU---UGUgGCaACGGCU--CGGUGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.