miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23450 5' -55.2 NC_005259.1 + 764 0.66 0.756382
Target:  5'- uACCGcgucCACCGc-GCCGAgGCgGCUGCc -3'
miRNA:   3'- uUGGUu---GUGGCaaCGGCU-CGgUGACG- -5'
23450 5' -55.2 NC_005259.1 + 899 0.67 0.692921
Target:  5'- -cCCAACACCGagguggUGcCCGGcgaucaccuGCUGCUGCg -3'
miRNA:   3'- uuGGUUGUGGCa-----AC-GGCU---------CGGUGACG- -5'
23450 5' -55.2 NC_005259.1 + 1177 0.69 0.572704
Target:  5'- cGCCGACAUCGUUgaGCCGcucaccuGCUacgACUGCa -3'
miRNA:   3'- uUGGUUGUGGCAA--CGGCu------CGG---UGACG- -5'
23450 5' -55.2 NC_005259.1 + 1832 0.67 0.713359
Target:  5'- cGACCugcuCGCCGcUGCCGccgaggccgagaaAGCCGCcGCc -3'
miRNA:   3'- -UUGGuu--GUGGCaACGGC-------------UCGGUGaCG- -5'
23450 5' -55.2 NC_005259.1 + 2157 0.68 0.638322
Target:  5'- uGGCCAGCggcgucgagccGCCgGUUGCCGAggucauggGCCGCUacgGCa -3'
miRNA:   3'- -UUGGUUG-----------UGG-CAACGGCU--------CGGUGA---CG- -5'
23450 5' -55.2 NC_005259.1 + 4417 0.69 0.551127
Target:  5'- gGGCCGcCACCGcgcgcccgagGUCGAGCCGCccgUGCg -3'
miRNA:   3'- -UUGGUuGUGGCaa--------CGGCUCGGUG---ACG- -5'
23450 5' -55.2 NC_005259.1 + 5191 0.67 0.682074
Target:  5'- -uCCGACGCCGccGCCaAGCuCACcGCg -3'
miRNA:   3'- uuGGUUGUGGCaaCGGcUCG-GUGaCG- -5'
23450 5' -55.2 NC_005259.1 + 5716 0.66 0.746054
Target:  5'- aGGCCAGCGCCGgacGgCG-GCCAUUcucGCg -3'
miRNA:   3'- -UUGGUUGUGGCaa-CgGCuCGGUGA---CG- -5'
23450 5' -55.2 NC_005259.1 + 6100 0.72 0.409906
Target:  5'- cGCCGAgauCGCCGagGCCGAGgCCGCcGCu -3'
miRNA:   3'- uUGGUU---GUGGCaaCGGCUC-GGUGaCG- -5'
23450 5' -55.2 NC_005259.1 + 6456 0.68 0.616371
Target:  5'- uGAUCGGCAgCGUcGCCGGuGCC-CUGUa -3'
miRNA:   3'- -UUGGUUGUgGCAaCGGCU-CGGuGACG- -5'
23450 5' -55.2 NC_005259.1 + 6927 0.69 0.583569
Target:  5'- gAACCGcCGCCGccuugagGCCGAGCuCGCcGCc -3'
miRNA:   3'- -UUGGUuGUGGCaa-----CGGCUCG-GUGaCG- -5'
23450 5' -55.2 NC_005259.1 + 7168 0.7 0.485074
Target:  5'- gGACCAcgaggGCACCGgcgagUGCCcGGCCugcggacgcaccggGCUGCg -3'
miRNA:   3'- -UUGGU-----UGUGGCa----ACGGcUCGG--------------UGACG- -5'
23450 5' -55.2 NC_005259.1 + 7632 0.71 0.467887
Target:  5'- gGACCuACACCGUcGCCGAGUUcgACcGCc -3'
miRNA:   3'- -UUGGuUGUGGCAaCGGCUCGG--UGaCG- -5'
23450 5' -55.2 NC_005259.1 + 8963 0.66 0.756382
Target:  5'- gGACgGGCACCG-UGCCGGgacguagguGCCAgCgGCg -3'
miRNA:   3'- -UUGgUUGUGGCaACGGCU---------CGGU-GaCG- -5'
23450 5' -55.2 NC_005259.1 + 9421 0.73 0.348212
Target:  5'- cGCC-ACACCGUUGUCGAgcaGCCACacGCc -3'
miRNA:   3'- uUGGuUGUGGCAACGGCU---CGGUGa-CG- -5'
23450 5' -55.2 NC_005259.1 + 11639 0.66 0.724006
Target:  5'- uAACCAuguauaucaagauAUACCGUggcgGCCacaucGAGCCACcGCc -3'
miRNA:   3'- -UUGGU-------------UGUGGCAa---CGG-----CUCGGUGaCG- -5'
23450 5' -55.2 NC_005259.1 + 12041 0.74 0.316053
Target:  5'- cAACCGGuacuCACCGagGCCGAGCU-CUGCg -3'
miRNA:   3'- -UUGGUU----GUGGCaaCGGCUCGGuGACG- -5'
23450 5' -55.2 NC_005259.1 + 13232 0.73 0.373824
Target:  5'- cGACCGGcCACCGUgaggGCCGAGCacccgGCg -3'
miRNA:   3'- -UUGGUU-GUGGCAa---CGGCUCGguga-CG- -5'
23450 5' -55.2 NC_005259.1 + 15058 0.7 0.498417
Target:  5'- uGGCCGAUACCGUgGCCacccuggcccuuGAGCCGgucaUGCg -3'
miRNA:   3'- -UUGGUUGUGGCAaCGG------------CUCGGUg---ACG- -5'
23450 5' -55.2 NC_005259.1 + 17761 0.69 0.561888
Target:  5'- aGGCCGccgcGCGCCGg-GCCGAGCgCACcgaGCg -3'
miRNA:   3'- -UUGGU----UGUGGCaaCGGCUCG-GUGa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.