miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23450 5' -55.2 NC_005259.1 + 47995 0.66 0.766583
Target:  5'- cAGCgCAAgACCGgcuUGUgUGAGCUGCUGCa -3'
miRNA:   3'- -UUG-GUUgUGGCa--ACG-GCUCGGUGACG- -5'
23450 5' -55.2 NC_005259.1 + 45405 0.71 0.47796
Target:  5'- cGCCGagcGCGCUGaugGCCGccGCCGCUGCc -3'
miRNA:   3'- uUGGU---UGUGGCaa-CGGCu-CGGUGACG- -5'
23450 5' -55.2 NC_005259.1 + 7168 0.7 0.485074
Target:  5'- gGACCAcgaggGCACCGgcgagUGCCcGGCCugcggacgcaccggGCUGCg -3'
miRNA:   3'- -UUGGU-----UGUGGCa----ACGGcUCGG--------------UGACG- -5'
23450 5' -55.2 NC_005259.1 + 43877 0.7 0.488138
Target:  5'- cACCGGCAgCGUUGCCGccgaCAUUGCc -3'
miRNA:   3'- uUGGUUGUgGCAACGGCucg-GUGACG- -5'
23450 5' -55.2 NC_005259.1 + 15058 0.7 0.498417
Target:  5'- uGGCCGAUACCGUgGCCacccuggcccuuGAGCCGgucaUGCg -3'
miRNA:   3'- -UUGGUUGUGGCAaCGG------------CUCGGUg---ACG- -5'
23450 5' -55.2 NC_005259.1 + 64433 0.7 0.498417
Target:  5'- cGCCGACGa-GcUGCCGGGgCGCUGCc -3'
miRNA:   3'- uUGGUUGUggCaACGGCUCgGUGACG- -5'
23450 5' -55.2 NC_005259.1 + 43658 0.7 0.50775
Target:  5'- cGCCGACGgugUCGUUGCCGAucacaccGCCGCcggugGCg -3'
miRNA:   3'- uUGGUUGU---GGCAACGGCU-------CGGUGa----CG- -5'
23450 5' -55.2 NC_005259.1 + 41872 0.7 0.508792
Target:  5'- cGGgCAGCACCGUggcggGCCGAuaCGCaUGCg -3'
miRNA:   3'- -UUgGUUGUGGCAa----CGGCUcgGUG-ACG- -5'
23450 5' -55.2 NC_005259.1 + 54303 0.7 0.508792
Target:  5'- aGGCCAGCACCGUgcacgGCUauuucaccucgGGGCCAUcggGCc -3'
miRNA:   3'- -UUGGUUGUGGCAa----CGG-----------CUCGGUGa--CG- -5'
23450 5' -55.2 NC_005259.1 + 7632 0.71 0.467887
Target:  5'- gGACCuACACCGUcGCCGAGUUcgACcGCc -3'
miRNA:   3'- -UUGGuUGUGGCAaCGGCUCGG--UGaCG- -5'
23450 5' -55.2 NC_005259.1 + 46772 0.71 0.457925
Target:  5'- cGCCGACAgCCGcgcccGCCGGGCCGaacaccgagcCUGCg -3'
miRNA:   3'- uUGGUUGU-GGCaa---CGGCUCGGU----------GACG- -5'
23450 5' -55.2 NC_005259.1 + 53154 0.72 0.419259
Target:  5'- cAGCCGcuACGCCGagGCCGAucucGCCACcGCc -3'
miRNA:   3'- -UUGGU--UGUGGCaaCGGCU----CGGUGaCG- -5'
23450 5' -55.2 NC_005259.1 + 45006 0.76 0.245624
Target:  5'- cGCCGAcCGCCGggGCCGcGCCGCccUGCu -3'
miRNA:   3'- uUGGUU-GUGGCaaCGGCuCGGUG--ACG- -5'
23450 5' -55.2 NC_005259.1 + 12041 0.74 0.316053
Target:  5'- cAACCGGuacuCACCGagGCCGAGCU-CUGCg -3'
miRNA:   3'- -UUGGUU----GUGGCaaCGGCUCGGuGACG- -5'
23450 5' -55.2 NC_005259.1 + 67412 0.74 0.323878
Target:  5'- gGGCCGACACCaucggggUGCCGGGCuCAC-GCu -3'
miRNA:   3'- -UUGGUUGUGGca-----ACGGCUCG-GUGaCG- -5'
23450 5' -55.2 NC_005259.1 + 9421 0.73 0.348212
Target:  5'- cGCC-ACACCGUUGUCGAgcaGCCACacGCc -3'
miRNA:   3'- uUGGuUGUGGCAACGGCU---CGGUGa-CG- -5'
23450 5' -55.2 NC_005259.1 + 57688 0.73 0.356608
Target:  5'- cGACCGugGCCagGUUGCCGGGCU--UGCc -3'
miRNA:   3'- -UUGGUugUGG--CAACGGCUCGGugACG- -5'
23450 5' -55.2 NC_005259.1 + 13232 0.73 0.373824
Target:  5'- cGACCGGcCACCGUgaggGCCGAGCacccgGCg -3'
miRNA:   3'- -UUGGUU-GUGGCAa---CGGCUCGguga-CG- -5'
23450 5' -55.2 NC_005259.1 + 48399 0.72 0.400683
Target:  5'- cGCCGACGcCCGccGUCGAGUCACcGCg -3'
miRNA:   3'- uUGGUUGU-GGCaaCGGCUCGGUGaCG- -5'
23450 5' -55.2 NC_005259.1 + 6100 0.72 0.409906
Target:  5'- cGCCGAgauCGCCGagGCCGAGgCCGCcGCu -3'
miRNA:   3'- uUGGUU---GUGGCaaCGGCUC-GGUGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.