miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23451 5' -54.4 NC_005259.1 + 13436 0.66 0.844597
Target:  5'- -gGgGCCGCgCUAgGCGugAcCGUCGg -3'
miRNA:   3'- cgUgUGGCGgGAUgCGCugUaGUAGC- -5'
23451 5' -54.4 NC_005259.1 + 50127 0.66 0.844597
Target:  5'- cGgGCACCGCCacACGCGAUugGUUggCGa -3'
miRNA:   3'- -CgUGUGGCGGgaUGCGCUG--UAGuaGC- -5'
23451 5' -54.4 NC_005259.1 + 14329 0.66 0.844597
Target:  5'- cGC-CGCCGCCCgcgUGCGggccgcCGACGcCAUCa -3'
miRNA:   3'- -CGuGUGGCGGG---AUGC------GCUGUaGUAGc -5'
23451 5' -54.4 NC_005259.1 + 66105 0.66 0.835979
Target:  5'- aGCGCACgCGCgacuUCUACGCG-CGUCGa-- -3'
miRNA:   3'- -CGUGUG-GCG----GGAUGCGCuGUAGUagc -5'
23451 5' -54.4 NC_005259.1 + 60270 0.66 0.835979
Target:  5'- gGC-CACCaGCgCUGCcggGCGGcCAUCGUCGu -3'
miRNA:   3'- -CGuGUGG-CGgGAUG---CGCU-GUAGUAGC- -5'
23451 5' -54.4 NC_005259.1 + 33839 0.66 0.827155
Target:  5'- aGCuuuaucuCGCCGUCCUugGuCGACucaagCAUCu -3'
miRNA:   3'- -CGu------GUGGCGGGAugC-GCUGua---GUAGc -5'
23451 5' -54.4 NC_005259.1 + 46755 0.66 0.827155
Target:  5'- gGCuGCGCCGacaCCUGCGcCGACAgCcgCGc -3'
miRNA:   3'- -CG-UGUGGCg--GGAUGC-GCUGUaGuaGC- -5'
23451 5' -54.4 NC_005259.1 + 37509 0.66 0.818132
Target:  5'- aGCACgauGCUGCCCgACGaGAagAUCGUCGg -3'
miRNA:   3'- -CGUG---UGGCGGGaUGCgCUg-UAGUAGC- -5'
23451 5' -54.4 NC_005259.1 + 35529 0.66 0.818132
Target:  5'- gGCACACCGCCCgcCGUcGCcgAUCcgCc -3'
miRNA:   3'- -CGUGUGGCGGGauGCGcUG--UAGuaGc -5'
23451 5' -54.4 NC_005259.1 + 13034 0.66 0.818132
Target:  5'- aGCACGCCaacacguucgGCCCguucUGCGCGAUG--GUCGa -3'
miRNA:   3'- -CGUGUGG----------CGGG----AUGCGCUGUagUAGC- -5'
23451 5' -54.4 NC_005259.1 + 44380 0.67 0.799528
Target:  5'- cCACACCGCCCaugauguCGCcgaGCA-CGUCGg -3'
miRNA:   3'- cGUGUGGCGGGau-----GCGc--UGUaGUAGC- -5'
23451 5' -54.4 NC_005259.1 + 53782 0.67 0.79858
Target:  5'- cGUACgACCGgCCUGaGCucgugucggugagGACAUCGUCGg -3'
miRNA:   3'- -CGUG-UGGCgGGAUgCG-------------CUGUAGUAGC- -5'
23451 5' -54.4 NC_005259.1 + 9397 0.67 0.789968
Target:  5'- cGCACGCgCGCCCcgguacgggUGCGCcACAccgUUGUCGa -3'
miRNA:   3'- -CGUGUG-GCGGG---------AUGCGcUGU---AGUAGC- -5'
23451 5' -54.4 NC_005259.1 + 22608 0.67 0.789968
Target:  5'- uGCACGCCGCCgacCGCcGCccgAUCAUCu -3'
miRNA:   3'- -CGUGUGGCGGgauGCGcUG---UAGUAGc -5'
23451 5' -54.4 NC_005259.1 + 54629 0.67 0.789968
Target:  5'- ---uGCCGCCC-ACGCGACAccgaggcaaUCAggUCGc -3'
miRNA:   3'- cgugUGGCGGGaUGCGCUGU---------AGU--AGC- -5'
23451 5' -54.4 NC_005259.1 + 52034 0.67 0.787068
Target:  5'- cGCACugCGCgCUGucgccgucgaggauCGCGACGcCGUCc -3'
miRNA:   3'- -CGUGugGCGgGAU--------------GCGCUGUaGUAGc -5'
23451 5' -54.4 NC_005259.1 + 50647 0.67 0.787068
Target:  5'- uUACGCCGCCCU-CGgGGCcauagggcaccagcgCGUCGg -3'
miRNA:   3'- cGUGUGGCGGGAuGCgCUGua-------------GUAGC- -5'
23451 5' -54.4 NC_005259.1 + 37052 0.67 0.780249
Target:  5'- cGC-CACCGCCC-ACGgCGGCggUGUCc -3'
miRNA:   3'- -CGuGUGGCGGGaUGC-GCUGuaGUAGc -5'
23451 5' -54.4 NC_005259.1 + 12219 0.67 0.780249
Target:  5'- gGCGCACCGCCCgcugGC-CGGgcaAUgGUCa -3'
miRNA:   3'- -CGUGUGGCGGGa---UGcGCUg--UAgUAGc -5'
23451 5' -54.4 NC_005259.1 + 18980 0.67 0.780249
Target:  5'- cGUACAUCGCCCgGCaCGAgAUCGgacUCGu -3'
miRNA:   3'- -CGUGUGGCGGGaUGcGCUgUAGU---AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.