miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23451 5' -54.4 NC_005259.1 + 31783 0.76 0.293967
Target:  5'- uGUGCugCGCCUUGacCGCGuCGUCAUCGa -3'
miRNA:   3'- -CGUGugGCGGGAU--GCGCuGUAGUAGC- -5'
23451 5' -54.4 NC_005259.1 + 3881 0.75 0.356257
Target:  5'- aGCcCACC-CCgCaGCGCGACAUCGUCGc -3'
miRNA:   3'- -CGuGUGGcGG-GaUGCGCUGUAGUAGC- -5'
23451 5' -54.4 NC_005259.1 + 27492 0.74 0.381894
Target:  5'- gGC-CACCGCCCcACGCGcCGagGUCGa -3'
miRNA:   3'- -CGuGUGGCGGGaUGCGCuGUagUAGC- -5'
23451 5' -54.4 NC_005259.1 + 28298 0.74 0.390708
Target:  5'- cCACgguGCCGCCCUGCGCaGCGUagAUCGg -3'
miRNA:   3'- cGUG---UGGCGGGAUGCGcUGUAg-UAGC- -5'
23451 5' -54.4 NC_005259.1 + 27758 0.74 0.394271
Target:  5'- gGUGCAUCGCCCUcgGCGaCGACcuugagcaccucgcgGUCAUCGa -3'
miRNA:   3'- -CGUGUGGCGGGA--UGC-GCUG---------------UAGUAGC- -5'
23451 5' -54.4 NC_005259.1 + 46586 0.73 0.417933
Target:  5'- cCGCGCCGCCCgAgGCGAgCAgcgCGUCGu -3'
miRNA:   3'- cGUGUGGCGGGaUgCGCU-GUa--GUAGC- -5'
23451 5' -54.4 NC_005259.1 + 44242 0.73 0.417933
Target:  5'- cCGCGCCGCCCgcGCGCGAgaaGUCggCGa -3'
miRNA:   3'- cGUGUGGCGGGa-UGCGCUg--UAGuaGC- -5'
23451 5' -54.4 NC_005259.1 + 279 0.73 0.417933
Target:  5'- uGUACGCCG-CCUACGCGGCcUCG-CGc -3'
miRNA:   3'- -CGUGUGGCgGGAUGCGCUGuAGUaGC- -5'
23451 5' -54.4 NC_005259.1 + 54935 0.73 0.434813
Target:  5'- uGUAC-CCGCCCcgucuuuggucgACGCGuCAUCGUCGu -3'
miRNA:   3'- -CGUGuGGCGGGa-----------UGCGCuGUAGUAGC- -5'
23451 5' -54.4 NC_005259.1 + 4650 0.73 0.455968
Target:  5'- cGCGCACCGCgCCUACG-GGCAcggUGUCu -3'
miRNA:   3'- -CGUGUGGCG-GGAUGCgCUGUa--GUAGc -5'
23451 5' -54.4 NC_005259.1 + 10572 0.72 0.465766
Target:  5'- uCGCGCCGCCUcgACgGCGAaAUCGUCGu -3'
miRNA:   3'- cGUGUGGCGGGa-UG-CGCUgUAGUAGC- -5'
23451 5' -54.4 NC_005259.1 + 43679 0.72 0.478664
Target:  5'- uCACACCGCCgccgguggcgaaccuCUugaaaccGCGCGACcgCAUCGa -3'
miRNA:   3'- cGUGUGGCGG---------------GA-------UGCGCUGuaGUAGC- -5'
23451 5' -54.4 NC_005259.1 + 28331 0.71 0.52666
Target:  5'- ---uGCCGUCCUugGCGGCGaaAUCGa -3'
miRNA:   3'- cgugUGGCGGGAugCGCUGUagUAGC- -5'
23451 5' -54.4 NC_005259.1 + 24136 0.71 0.537112
Target:  5'- cGC-CGCCGCCCUgcucgccgaguuGCGCGAUGUCu--- -3'
miRNA:   3'- -CGuGUGGCGGGA------------UGCGCUGUAGuagc -5'
23451 5' -54.4 NC_005259.1 + 18666 0.71 0.558223
Target:  5'- uGC-CGCCGCCCga-GU-ACGUCAUCGa -3'
miRNA:   3'- -CGuGUGGCGGGaugCGcUGUAGUAGC- -5'
23451 5' -54.4 NC_005259.1 + 5825 0.7 0.590297
Target:  5'- cCACACCGCCCgagaccagaACGUGcGCAugcUCGUCGc -3'
miRNA:   3'- cGUGUGGCGGGa--------UGCGC-UGU---AGUAGC- -5'
23451 5' -54.4 NC_005259.1 + 25083 0.7 0.608623
Target:  5'- uGC-CACCGCCgCUGCGCccgccccgagcaagGGCAagGUCGa -3'
miRNA:   3'- -CGuGUGGCGG-GAUGCG--------------CUGUagUAGC- -5'
23451 5' -54.4 NC_005259.1 + 64752 0.7 0.611864
Target:  5'- cGCcCACCGCgCCU-CGCGACGgugCGccUCGg -3'
miRNA:   3'- -CGuGUGGCG-GGAuGCGCUGUa--GU--AGC- -5'
23451 5' -54.4 NC_005259.1 + 32911 0.7 0.622676
Target:  5'- aGC-CACCcgGCCCgcucggGCGCGGCGguaUCGUCa -3'
miRNA:   3'- -CGuGUGG--CGGGa-----UGCGCUGU---AGUAGc -5'
23451 5' -54.4 NC_005259.1 + 52957 0.7 0.622676
Target:  5'- aGCAC-CCGCCgCUGCcCGGCugCAUCGg -3'
miRNA:   3'- -CGUGuGGCGG-GAUGcGCUGuaGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.