Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23452 | 3' | -62.5 | NC_005259.1 | + | 47763 | 0.66 | 0.403974 |
Target: 5'- aGCGGCUG-CGCGaUGGCCUUuuggaaaucgcGCAG-CGg -3' miRNA: 3'- -CGCCGACgGCGC-ACCGGGA-----------UGUCcGU- -5' |
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23452 | 3' | -62.5 | NC_005259.1 | + | 42514 | 0.67 | 0.353758 |
Target: 5'- uGUGGCcagcaGCCGUccGGCCCcgAUGGGCAc -3' miRNA: 3'- -CGCCGa----CGGCGcaCCGGGa-UGUCCGU- -5' |
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23452 | 3' | -62.5 | NC_005259.1 | + | 26826 | 0.67 | 0.353758 |
Target: 5'- gGCGGUggUGCCGgGgcGGUCUgcuCGGGCAg -3' miRNA: 3'- -CGCCG--ACGGCgCa-CCGGGau-GUCCGU- -5' |
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23452 | 3' | -62.5 | NC_005259.1 | + | 58941 | 0.67 | 0.353758 |
Target: 5'- cGCGGUgGCaGCGUcGGCCUUGgccagcagguCGGGCAg -3' miRNA: 3'- -CGCCGaCGgCGCA-CCGGGAU----------GUCCGU- -5' |
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23452 | 3' | -62.5 | NC_005259.1 | + | 27095 | 0.66 | 0.369997 |
Target: 5'- gGCGGCUGCCauGCGgugGGCUgUGuCAuGCGg -3' miRNA: 3'- -CGCCGACGG--CGCa--CCGGgAU-GUcCGU- -5' |
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23452 | 3' | -62.5 | NC_005259.1 | + | 49542 | 0.66 | 0.375801 |
Target: 5'- cGUGGCcaccucagUGCCGggcuguucgucgguCGUGGCCagaccgGCGGGCGg -3' miRNA: 3'- -CGCCG--------ACGGC--------------GCACCGGga----UGUCCGU- -5' |
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23452 | 3' | -62.5 | NC_005259.1 | + | 64818 | 0.66 | 0.37747 |
Target: 5'- gGCGGCaaUGagCGUGUGGugacggaCCCUGCuGGCGa -3' miRNA: 3'- -CGCCG--ACg-GCGCACC-------GGGAUGuCCGU- -5' |
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23452 | 3' | -62.5 | NC_005259.1 | + | 47963 | 0.66 | 0.378306 |
Target: 5'- aUGGCcGCCGCGccGCCCgcgaauaugcCGGGCAg -3' miRNA: 3'- cGCCGaCGGCGCacCGGGau--------GUCCGU- -5' |
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23452 | 3' | -62.5 | NC_005259.1 | + | 63859 | 0.66 | 0.378306 |
Target: 5'- cCGGCgaggugGCCGgcUGGCCUUGCguGGGCGu -3' miRNA: 3'- cGCCGa-----CGGCgcACCGGGAUG--UCCGU- -5' |
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23452 | 3' | -62.5 | NC_005259.1 | + | 2177 | 0.67 | 0.345828 |
Target: 5'- cCGGUUGCCGaGgucaugGGCCgCUAC-GGCAa -3' miRNA: 3'- cGCCGACGGCgCa-----CCGG-GAUGuCCGU- -5' |
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23452 | 3' | -62.5 | NC_005259.1 | + | 41667 | 0.67 | 0.330356 |
Target: 5'- aGCGGgauCUGCaccgcguGCGUGGCCaccgcgcacACAGGCAu -3' miRNA: 3'- -CGCC---GACGg------CGCACCGGga-------UGUCCGU- -5' |
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23452 | 3' | -62.5 | NC_005259.1 | + | 27145 | 0.68 | 0.300959 |
Target: 5'- gGCGGCUGCgGUGUuggGGCCaacgaUGCcgucGGCGa -3' miRNA: 3'- -CGCCGACGgCGCA---CCGGg----AUGu---CCGU- -5' |
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23452 | 3' | -62.5 | NC_005259.1 | + | 37743 | 0.72 | 0.153484 |
Target: 5'- aCGaGCUGCucgaugaccagCGCgGUGGcCCCUGCGGGCAc -3' miRNA: 3'- cGC-CGACG-----------GCG-CACC-GGGAUGUCCGU- -5' |
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23452 | 3' | -62.5 | NC_005259.1 | + | 64438 | 0.72 | 0.161667 |
Target: 5'- aCGaGCUGCCGgGgcgcuGCCCUugGGGCGg -3' miRNA: 3'- cGC-CGACGGCgCac---CGGGAugUCCGU- -5' |
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23452 | 3' | -62.5 | NC_005259.1 | + | 29911 | 0.7 | 0.208186 |
Target: 5'- gGUGGCUGCCcgagaccaucgacGCGUGGCCgCcACGcGGCc -3' miRNA: 3'- -CGCCGACGG-------------CGCACCGG-GaUGU-CCGu -5' |
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23452 | 3' | -62.5 | NC_005259.1 | + | 60144 | 0.7 | 0.219436 |
Target: 5'- cGCGGCcuugGCCGCcgccucagcGGCCUcACGGGCGg -3' miRNA: 3'- -CGCCGa---CGGCGca-------CCGGGaUGUCCGU- -5' |
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23452 | 3' | -62.5 | NC_005259.1 | + | 55125 | 0.69 | 0.248315 |
Target: 5'- cCGGCUGCCGU---GCCgaGCAGGCc -3' miRNA: 3'- cGCCGACGGCGcacCGGgaUGUCCGu -5' |
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23452 | 3' | -62.5 | NC_005259.1 | + | 784 | 0.69 | 0.253835 |
Target: 5'- gGCGGCUGCCcucgguuGgGUGGCCa-AgGGGCc -3' miRNA: 3'- -CGCCGACGG-------CgCACCGGgaUgUCCGu -5' |
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23452 | 3' | -62.5 | NC_005259.1 | + | 51658 | 0.69 | 0.254455 |
Target: 5'- -gGGUUGCCGCGcgGGCgCguCGGGCAc -3' miRNA: 3'- cgCCGACGGCGCa-CCGgGauGUCCGU- -5' |
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23452 | 3' | -62.5 | NC_005259.1 | + | 37250 | 0.68 | 0.287035 |
Target: 5'- uUGGCUGCCGcCGUuGCCaggCUugAGGCc -3' miRNA: 3'- cGCCGACGGC-GCAcCGG---GAugUCCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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