miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23452 5' -54.9 NC_005259.1 + 27910 0.66 0.802702
Target:  5'- gCCgagACCgcGCGGGUGGU-AGCGGuucgGCg -3'
miRNA:   3'- -GGa--UGGa-UGUCCACCGgUCGCCua--UG- -5'
23452 5' -54.9 NC_005259.1 + 56039 0.66 0.802702
Target:  5'- aCUuCCU-CGGGcGGCU-GCGGGUACu -3'
miRNA:   3'- gGAuGGAuGUCCaCCGGuCGCCUAUG- -5'
23452 5' -54.9 NC_005259.1 + 26438 0.66 0.78339
Target:  5'- aCC-GCCgaGCGGGcgGGCCGGUGGGc-- -3'
miRNA:   3'- -GGaUGGa-UGUCCa-CCGGUCGCCUaug -5'
23452 5' -54.9 NC_005259.1 + 37757 0.66 0.78339
Target:  5'- --gACCaGCGcGGUGGCCccuGCGGGcACg -3'
miRNA:   3'- ggaUGGaUGU-CCACCGGu--CGCCUaUG- -5'
23452 5' -54.9 NC_005259.1 + 38961 0.66 0.763463
Target:  5'- gCCgagaGCCUGCAcGaUGGCaucGCGGAUACc -3'
miRNA:   3'- -GGa---UGGAUGUcC-ACCGgu-CGCCUAUG- -5'
23452 5' -54.9 NC_005259.1 + 60418 0.68 0.690138
Target:  5'- aUCUGCUcGgGGGUGGCCcacggGGCGGccACg -3'
miRNA:   3'- -GGAUGGaUgUCCACCGG-----UCGCCuaUG- -5'
23452 5' -54.9 NC_005259.1 + 8971 0.68 0.646788
Target:  5'- aCCgUGCCgggACguAGGU-GCCAGCGGcgACg -3'
miRNA:   3'- -GG-AUGGa--UG--UCCAcCGGUCGCCuaUG- -5'
23452 5' -54.9 NC_005259.1 + 9977 0.69 0.624994
Target:  5'- aCCgcACCgguCgAGGUGGCCAGcCGGggACu -3'
miRNA:   3'- -GGa-UGGau-G-UCCACCGGUC-GCCuaUG- -5'
23452 5' -54.9 NC_005259.1 + 13198 0.69 0.603223
Target:  5'- cUCUACCaagcACAGcGgGGCCAGCGGuggGCc -3'
miRNA:   3'- -GGAUGGa---UGUC-CaCCGGUCGCCua-UG- -5'
23452 5' -54.9 NC_005259.1 + 29086 0.7 0.538759
Target:  5'- gCUGCCaaggcCGGGUGGUgAGCuGAUGCg -3'
miRNA:   3'- gGAUGGau---GUCCACCGgUCGcCUAUG- -5'
23452 5' -54.9 NC_005259.1 + 36004 0.7 0.52822
Target:  5'- gCCggaCUGCaccgAGGUGGCCAGCGaGGUcgACa -3'
miRNA:   3'- -GGaugGAUG----UCCACCGGUCGC-CUA--UG- -5'
23452 5' -54.9 NC_005259.1 + 63854 0.71 0.507382
Target:  5'- gCgUACCgGCgAGGUGGCCGGCuGGccuUGCg -3'
miRNA:   3'- -GgAUGGaUG-UCCACCGGUCG-CCu--AUG- -5'
23452 5' -54.9 NC_005259.1 + 58274 0.74 0.356432
Target:  5'- -aUGCCcgacagauCAGGUucgcgaGGCCAGCGGAUACc -3'
miRNA:   3'- ggAUGGau------GUCCA------CCGGUCGCCUAUG- -5'
23452 5' -54.9 NC_005259.1 + 35648 0.78 0.199851
Target:  5'- gCUGCCgcugGCgaGGGUGGCCAGCGcGGUGg -3'
miRNA:   3'- gGAUGGa---UG--UCCACCGGUCGC-CUAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.