miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23453 5' -56.9 NC_005259.1 + 66609 0.67 0.634251
Target:  5'- -aUGCaGGUGgggGCGGuauuucucgucccugGCCACCGCUCGg -3'
miRNA:   3'- ucACGgUCACa--UGCU---------------UGGUGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 26419 0.67 0.629968
Target:  5'- cGGUGCCGccGUA-GAACgCACCGCCg- -3'
miRNA:   3'- -UCACGGUcaCAUgCUUG-GUGGCGGgc -5'
23453 5' -56.9 NC_005259.1 + 37558 0.67 0.619262
Target:  5'- uGGUGuCCGaUGU-CGAcuGCuCGCCGCCCGc -3'
miRNA:   3'- -UCAC-GGUcACAuGCU--UG-GUGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 12332 0.67 0.619262
Target:  5'- --cGCCAGcucACGcACCGCCGCCuCGa -3'
miRNA:   3'- ucaCGGUCacaUGCuUGGUGGCGG-GC- -5'
23453 5' -56.9 NC_005259.1 + 47955 0.67 0.608568
Target:  5'- cGGUGCCGaUGgcCGccgCGCCGCCCGc -3'
miRNA:   3'- -UCACGGUcACauGCuugGUGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 754 0.68 0.587245
Target:  5'- --cGCCGGUGccuaccGCGu-CCACCGCgCCGa -3'
miRNA:   3'- ucaCGGUCACa-----UGCuuGGUGGCG-GGC- -5'
23453 5' -56.9 NC_005259.1 + 12992 0.68 0.587245
Target:  5'- uGGUGCUcGcGUucgcacuCGGcuacGCCGCCGCCCGg -3'
miRNA:   3'- -UCACGGuCaCAu------GCU----UGGUGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 67953 0.68 0.580873
Target:  5'- cGGUGCgGGuUGUgcuguagcgcgcgcaGCGGcgugGCCACCGCCgCGa -3'
miRNA:   3'- -UCACGgUC-ACA---------------UGCU----UGGUGGCGG-GC- -5'
23453 5' -56.9 NC_005259.1 + 26051 0.68 0.576632
Target:  5'- --cGCCGG-GUugGccauGCCGCCGCCg- -3'
miRNA:   3'- ucaCGGUCaCAugCu---UGGUGGCGGgc -5'
23453 5' -56.9 NC_005259.1 + 9789 0.68 0.574515
Target:  5'- -cUGcCCGGUGUGCccgcucgcgccACUACCGCCCGc -3'
miRNA:   3'- ucAC-GGUCACAUGcu---------UGGUGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 11662 0.68 0.566064
Target:  5'- cGUGgCGGccacauCGAGCCACCGCCUc -3'
miRNA:   3'- uCACgGUCacau--GCUUGGUGGCGGGc -5'
23453 5' -56.9 NC_005259.1 + 44509 0.68 0.566064
Target:  5'- gGGUGCCc-UGgccACccacGCCGCCGCCCGg -3'
miRNA:   3'- -UCACGGucACa--UGcu--UGGUGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 36642 0.68 0.555546
Target:  5'- aAG-GCCcGcGaucaGCGAGCCGCCGCCCu -3'
miRNA:   3'- -UCaCGGuCaCa---UGCUUGGUGGCGGGc -5'
23453 5' -56.9 NC_005259.1 + 620 0.68 0.545085
Target:  5'- uGUGCUGGUGauCGAccgugacaacGCCACCGCCg- -3'
miRNA:   3'- uCACGGUCACauGCU----------UGGUGGCGGgc -5'
23453 5' -56.9 NC_005259.1 + 9949 0.68 0.545085
Target:  5'- --cGCCAccaauCGAGCCgACCGCCCGa -3'
miRNA:   3'- ucaCGGUcacauGCUUGG-UGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 8986 0.68 0.545085
Target:  5'- aGGUGCCAGcg-GCGAcgGCaGCCGCCuCGu -3'
miRNA:   3'- -UCACGGUCacaUGCU--UGgUGGCGG-GC- -5'
23453 5' -56.9 NC_005259.1 + 43816 0.69 0.534689
Target:  5'- -uUGCCGGgcGUACcgccggacacaGGGCCGCCGCUCGc -3'
miRNA:   3'- ucACGGUCa-CAUG-----------CUUGGUGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 7249 0.69 0.521281
Target:  5'- --cGCCGGUGUcgaguGCGccaagaaacugcucGGCUACCGCCCc -3'
miRNA:   3'- ucaCGGUCACA-----UGC--------------UUGGUGGCGGGc -5'
23453 5' -56.9 NC_005259.1 + 34626 0.69 0.514115
Target:  5'- uGUGCCAGacgaUGggcGCGGACCACacuaGCCgGa -3'
miRNA:   3'- uCACGGUC----ACa--UGCUUGGUGg---CGGgC- -5'
23453 5' -56.9 NC_005259.1 + 43688 0.69 0.513095
Target:  5'- --cGCCGGUG-GCGAACCucuugaaACCGCgCGa -3'
miRNA:   3'- ucaCGGUCACaUGCUUGG-------UGGCGgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.