Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23454 | 3' | -59.8 | NC_005259.1 | + | 20059 | 0.66 | 0.537993 |
Target: 5'- -aUGUCCGCU--GCgguGGCGGUCGUCa -3' miRNA: 3'- ucACGGGCGGgaUGug-CCGCCAGUAG- -5' |
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23454 | 3' | -59.8 | NC_005259.1 | + | 66263 | 0.66 | 0.537993 |
Target: 5'- --gGCCCGCgCCgg-GCGGCGGcUCAc- -3' miRNA: 3'- ucaCGGGCG-GGaugUGCCGCC-AGUag -5' |
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23454 | 3' | -59.8 | NC_005259.1 | + | 29935 | 0.66 | 0.537993 |
Target: 5'- cGUGgCCGCC--ACGCGGCccGGUCGc- -3' miRNA: 3'- uCACgGGCGGgaUGUGCCG--CCAGUag -5' |
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23454 | 3' | -59.8 | NC_005259.1 | + | 66725 | 0.66 | 0.527773 |
Target: 5'- -aUGCCCGCCgc-CACG-CGGUCAg- -3' miRNA: 3'- ucACGGGCGGgauGUGCcGCCAGUag -5' |
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23454 | 3' | -59.8 | NC_005259.1 | + | 58641 | 0.66 | 0.527773 |
Target: 5'- cAGUGCCCauGCCCU-CGCGGUagcccGGUgCAc- -3' miRNA: 3'- -UCACGGG--CGGGAuGUGCCG-----CCA-GUag -5' |
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23454 | 3' | -59.8 | NC_005259.1 | + | 20532 | 0.66 | 0.517627 |
Target: 5'- gGGUGCgCUGCCCgcaGCGUGGUGGaUCAg- -3' miRNA: 3'- -UCACG-GGCGGGa--UGUGCCGCC-AGUag -5' |
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23454 | 3' | -59.8 | NC_005259.1 | + | 18689 | 0.66 | 0.507559 |
Target: 5'- gAGgGUCUGCUUgaGCACGGCGGUCu-- -3' miRNA: 3'- -UCaCGGGCGGGa-UGUGCCGCCAGuag -5' |
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23454 | 3' | -59.8 | NC_005259.1 | + | 1972 | 0.67 | 0.458576 |
Target: 5'- cGUuCCgGCgCUACACGaGCGGUCGg- -3' miRNA: 3'- uCAcGGgCGgGAUGUGC-CGCCAGUag -5' |
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23454 | 3' | -59.8 | NC_005259.1 | + | 8749 | 0.67 | 0.449081 |
Target: 5'- --aGCCCgucgaggucgagGCCCUuggccaGCGCGGCGGUgAUg -3' miRNA: 3'- ucaCGGG------------CGGGA------UGUGCCGCCAgUAg -5' |
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23454 | 3' | -59.8 | NC_005259.1 | + | 27372 | 0.67 | 0.439696 |
Target: 5'- uGGUGCCCGgCaCggugACcgGCGGCGGU-GUCg -3' miRNA: 3'- -UCACGGGCgG-Ga---UG--UGCCGCCAgUAG- -5' |
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23454 | 3' | -59.8 | NC_005259.1 | + | 29975 | 0.68 | 0.403312 |
Target: 5'- cGGUGaCCGUCCaacggaccccGCACGGUGGUCAc- -3' miRNA: 3'- -UCACgGGCGGGa---------UGUGCCGCCAGUag -5' |
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23454 | 3' | -59.8 | NC_005259.1 | + | 13051 | 0.68 | 0.385849 |
Target: 5'- --gGCCCGUUCUGCGCGaUGGUCGa- -3' miRNA: 3'- ucaCGGGCGGGAUGUGCcGCCAGUag -5' |
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23454 | 3' | -59.8 | NC_005259.1 | + | 45224 | 0.69 | 0.377306 |
Target: 5'- --aGCCCgauGCCCUGCACcuugcucaGGUcgccGGUCAUCg -3' miRNA: 3'- ucaCGGG---CGGGAUGUG--------CCG----CCAGUAG- -5' |
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23454 | 3' | -59.8 | NC_005259.1 | + | 41223 | 0.69 | 0.377306 |
Target: 5'- --cGUCaCGCCCUGCuCGGCGGUgAc- -3' miRNA: 3'- ucaCGG-GCGGGAUGuGCCGCCAgUag -5' |
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23454 | 3' | -59.8 | NC_005259.1 | + | 7187 | 0.7 | 0.326482 |
Target: 5'- gAGUGCCCGgCCUGCggacgcaccgggcuGCGGUGGaUCu-- -3' miRNA: 3'- -UCACGGGCgGGAUG--------------UGCCGCC-AGuag -5' |
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23454 | 3' | -59.8 | NC_005259.1 | + | 28326 | 0.7 | 0.321158 |
Target: 5'- cGGUGUgCCGUCCUugGCGGCGaa-AUCg -3' miRNA: 3'- -UCACG-GGCGGGAugUGCCGCcagUAG- -5' |
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23454 | 3' | -59.8 | NC_005259.1 | + | 32323 | 0.72 | 0.216955 |
Target: 5'- cAGUGCCCGCCaauugUGCGCGGC---CAUCa -3' miRNA: 3'- -UCACGGGCGGg----AUGUGCCGccaGUAG- -5' |
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23454 | 3' | -59.8 | NC_005259.1 | + | 55003 | 0.73 | 0.200973 |
Target: 5'- uGUGCUCGgCUcGCuuGGCGGUCGUCu -3' miRNA: 3'- uCACGGGCgGGaUGugCCGCCAGUAG- -5' |
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23454 | 3' | -59.8 | NC_005259.1 | + | 27757 | 0.74 | 0.169387 |
Target: 5'- cGGUGCaUCGCCCUcggcgacgaccuugaGCACcucGCGGUCAUCg -3' miRNA: 3'- -UCACG-GGCGGGA---------------UGUGc--CGCCAGUAG- -5' |
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23454 | 3' | -59.8 | NC_005259.1 | + | 37045 | 0.75 | 0.15087 |
Target: 5'- uGGUGCCCGCCaccgccCACGGCGGcggUGUCc -3' miRNA: 3'- -UCACGGGCGGgau---GUGCCGCCa--GUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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