miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23455 3' -53.3 NC_005259.1 + 19719 0.88 0.052786
Target:  5'- --uGCCGCCGAGGUGAUCGACGGgGAc -3'
miRNA:   3'- uagUGGCGGUUCCACUAGUUGCCaCU- -5'
23455 3' -53.3 NC_005259.1 + 63178 0.78 0.247466
Target:  5'- -gCGCCGCCGAGGUGAUCGcacccCGGUc- -3'
miRNA:   3'- uaGUGGCGGUUCCACUAGUu----GCCAcu -5'
23455 3' -53.3 NC_005259.1 + 25987 0.74 0.405082
Target:  5'- -gCAgCGCCGAGGUGAaCAACGGa-- -3'
miRNA:   3'- uaGUgGCGGUUCCACUaGUUGCCacu -5'
23455 3' -53.3 NC_005259.1 + 56235 0.73 0.432628
Target:  5'- cGUCGCCGCCGAccacguuGG-GAUCGGCGGccuUGAg -3'
miRNA:   3'- -UAGUGGCGGUU-------CCaCUAGUUGCC---ACU- -5'
23455 3' -53.3 NC_005259.1 + 22767 0.71 0.54696
Target:  5'- -gCACCGCCAAGGcgcUGGUCAcuguGCaGGUGc -3'
miRNA:   3'- uaGUGGCGGUUCC---ACUAGU----UG-CCACu -5'
23455 3' -53.3 NC_005259.1 + 35640 0.71 0.589541
Target:  5'- -cCGCCGCCGcugccgcuggcgaGGGUGGcCAgcGCGGUGGu -3'
miRNA:   3'- uaGUGGCGGU-------------UCCACUaGU--UGCCACU- -5'
23455 3' -53.3 NC_005259.1 + 61632 0.71 0.590643
Target:  5'- -gCACCGCCGAcGGUGAacUCAcCGGUc- -3'
miRNA:   3'- uaGUGGCGGUU-CCACU--AGUuGCCAcu -5'
23455 3' -53.3 NC_005259.1 + 15970 0.7 0.634885
Target:  5'- aGUCGCCGCCcAGuucggucgaGUGAUCAccgcCGGUGGc -3'
miRNA:   3'- -UAGUGGCGGuUC---------CACUAGUu---GCCACU- -5'
23455 3' -53.3 NC_005259.1 + 54483 0.7 0.634885
Target:  5'- cAUC-CCGCCGAGGgucAUCGGCGGg-- -3'
miRNA:   3'- -UAGuGGCGGUUCCac-UAGUUGCCacu -5'
23455 3' -53.3 NC_005259.1 + 41172 0.69 0.677981
Target:  5'- -gUACUGgCGAGGUgugaauuGAUCGAUGGUGAu -3'
miRNA:   3'- uaGUGGCgGUUCCA-------CUAGUUGCCACU- -5'
23455 3' -53.3 NC_005259.1 + 46079 0.69 0.67908
Target:  5'- -gCACCGCCGGGGcGA---GCGGUGc -3'
miRNA:   3'- uaGUGGCGGUUCCaCUaguUGCCACu -5'
23455 3' -53.3 NC_005259.1 + 8745 0.69 0.683471
Target:  5'- aGUCAgcCCGUCGAGGUcgaggcccuuggccaGcgCGGCGGUGAu -3'
miRNA:   3'- -UAGU--GGCGGUUCCA---------------CuaGUUGCCACU- -5'
23455 3' -53.3 NC_005259.1 + 38607 0.69 0.70095
Target:  5'- uGUCACUGaCCuuGGUGAacaUCGaggGCGGUGAc -3'
miRNA:   3'- -UAGUGGC-GGuuCCACU---AGU---UGCCACU- -5'
23455 3' -53.3 NC_005259.1 + 23367 0.69 0.711789
Target:  5'- --gGCCGCCGAGGcaugGAUCGucaacaGCGGUa- -3'
miRNA:   3'- uagUGGCGGUUCCa---CUAGU------UGCCAcu -5'
23455 3' -53.3 NC_005259.1 + 51488 0.68 0.733216
Target:  5'- -aCACCGCCGGGGauaGGUCGACGc--- -3'
miRNA:   3'- uaGUGGCGGUUCCa--CUAGUUGCcacu -5'
23455 3' -53.3 NC_005259.1 + 17348 0.68 0.743782
Target:  5'- cGUCGCCGUCGAGGUcGGcggcUCGGCGcUGGu -3'
miRNA:   3'- -UAGUGGCGGUUCCA-CU----AGUUGCcACU- -5'
23455 3' -53.3 NC_005259.1 + 30004 0.68 0.743782
Target:  5'- gGUCACCacgaCAAGGUGAcCAccgccgggGCGGUGGg -3'
miRNA:   3'- -UAGUGGcg--GUUCCACUaGU--------UGCCACU- -5'
23455 3' -53.3 NC_005259.1 + 20972 0.68 0.764558
Target:  5'- -gUAUCGCCGGGGUGA-CAacuGCGuGUGGg -3'
miRNA:   3'- uaGUGGCGGUUCCACUaGU---UGC-CACU- -5'
23455 3' -53.3 NC_005259.1 + 41481 0.68 0.764558
Target:  5'- -aCGCCGUCGAGcacGAccUCGGCGGUGGc -3'
miRNA:   3'- uaGUGGCGGUUCca-CU--AGUUGCCACU- -5'
23455 3' -53.3 NC_005259.1 + 55037 0.67 0.774745
Target:  5'- --gGCUGCCGAGGUGcuugCcuCGGUGGc -3'
miRNA:   3'- uagUGGCGGUUCCACua--GuuGCCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.