Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23455 | 3' | -53.3 | NC_005259.1 | + | 63178 | 0.78 | 0.247466 |
Target: 5'- -gCGCCGCCGAGGUGAUCGcacccCGGUc- -3' miRNA: 3'- uaGUGGCGGUUCCACUAGUu----GCCAcu -5' |
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23455 | 3' | -53.3 | NC_005259.1 | + | 61632 | 0.71 | 0.590643 |
Target: 5'- -gCACCGCCGAcGGUGAacUCAcCGGUc- -3' miRNA: 3'- uaGUGGCGGUU-CCACU--AGUuGCCAcu -5' |
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23455 | 3' | -53.3 | NC_005259.1 | + | 56235 | 0.73 | 0.432628 |
Target: 5'- cGUCGCCGCCGAccacguuGG-GAUCGGCGGccuUGAg -3' miRNA: 3'- -UAGUGGCGGUU-------CCaCUAGUUGCC---ACU- -5' |
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23455 | 3' | -53.3 | NC_005259.1 | + | 55037 | 0.67 | 0.774745 |
Target: 5'- --gGCUGCCGAGGUGcuugCcuCGGUGGc -3' miRNA: 3'- uagUGGCGGUUCCACua--GuuGCCACU- -5' |
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23455 | 3' | -53.3 | NC_005259.1 | + | 54483 | 0.7 | 0.634885 |
Target: 5'- cAUC-CCGCCGAGGgucAUCGGCGGg-- -3' miRNA: 3'- -UAGuGGCGGUUCCac-UAGUUGCCacu -5' |
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23455 | 3' | -53.3 | NC_005259.1 | + | 51488 | 0.68 | 0.733216 |
Target: 5'- -aCACCGCCGGGGauaGGUCGACGc--- -3' miRNA: 3'- uaGUGGCGGUUCCa--CUAGUUGCcacu -5' |
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23455 | 3' | -53.3 | NC_005259.1 | + | 47467 | 0.66 | 0.823213 |
Target: 5'- gGUCAgCCaCCGAGGUGAUCGcgucaccgaggcGCGGcagGAa -3' miRNA: 3'- -UAGU-GGcGGUUCCACUAGU------------UGCCa--CU- -5' |
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23455 | 3' | -53.3 | NC_005259.1 | + | 47167 | 0.66 | 0.832338 |
Target: 5'- gAUCACCGUagcGGcgaaGGUCGGCGGUGc -3' miRNA: 3'- -UAGUGGCGguuCCa---CUAGUUGCCACu -5' |
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23455 | 3' | -53.3 | NC_005259.1 | + | 46079 | 0.69 | 0.67908 |
Target: 5'- -gCACCGCCGGGGcGA---GCGGUGc -3' miRNA: 3'- uaGUGGCGGUUCCaCUaguUGCCACu -5' |
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23455 | 3' | -53.3 | NC_005259.1 | + | 45177 | 0.67 | 0.813885 |
Target: 5'- uGUUGCgCGCCGAGG---UCAgcGCGGUGAu -3' miRNA: 3'- -UAGUG-GCGGUUCCacuAGU--UGCCACU- -5' |
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23455 | 3' | -53.3 | NC_005259.1 | + | 43886 | 0.66 | 0.849079 |
Target: 5'- cGUUGCCGCCGAcauugcccgcgccGGcUGAUCGAUGGg-- -3' miRNA: 3'- -UAGUGGCGGUU-------------CC-ACUAGUUGCCacu -5' |
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23455 | 3' | -53.3 | NC_005259.1 | + | 41481 | 0.68 | 0.764558 |
Target: 5'- -aCGCCGUCGAGcacGAccUCGGCGGUGGc -3' miRNA: 3'- uaGUGGCGGUUCca-CU--AGUUGCCACU- -5' |
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23455 | 3' | -53.3 | NC_005259.1 | + | 41172 | 0.69 | 0.677981 |
Target: 5'- -gUACUGgCGAGGUgugaauuGAUCGAUGGUGAu -3' miRNA: 3'- uaGUGGCgGUUCCA-------CUAGUUGCCACU- -5' |
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23455 | 3' | -53.3 | NC_005259.1 | + | 38607 | 0.69 | 0.70095 |
Target: 5'- uGUCACUGaCCuuGGUGAacaUCGaggGCGGUGAc -3' miRNA: 3'- -UAGUGGC-GGuuCCACU---AGU---UGCCACU- -5' |
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23455 | 3' | -53.3 | NC_005259.1 | + | 37476 | 0.67 | 0.804363 |
Target: 5'- -aCGCCGCCGuuGGcUGAcccaccccCGGCGGUGAg -3' miRNA: 3'- uaGUGGCGGUu-CC-ACUa-------GUUGCCACU- -5' |
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23455 | 3' | -53.3 | NC_005259.1 | + | 36526 | 0.66 | 0.849079 |
Target: 5'- -cCAcCCGCgcggugugacacgCGGGGUGAUCuGCGGUGu -3' miRNA: 3'- uaGU-GGCG-------------GUUCCACUAGuUGCCACu -5' |
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23455 | 3' | -53.3 | NC_005259.1 | + | 36440 | 0.67 | 0.804363 |
Target: 5'- -gCGUCGCCGAGGUcGAccgcgUCGAgGGUGAg -3' miRNA: 3'- uaGUGGCGGUUCCA-CU-----AGUUgCCACU- -5' |
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23455 | 3' | -53.3 | NC_005259.1 | + | 35640 | 0.71 | 0.589541 |
Target: 5'- -cCGCCGCCGcugccgcuggcgaGGGUGGcCAgcGCGGUGGu -3' miRNA: 3'- uaGUGGCGGU-------------UCCACUaGU--UGCCACU- -5' |
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23455 | 3' | -53.3 | NC_005259.1 | + | 30616 | 0.66 | 0.866611 |
Target: 5'- cUCGCCGUUucuGGUGAUCGA--GUGAa -3' miRNA: 3'- uAGUGGCGGuu-CCACUAGUUgcCACU- -5' |
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23455 | 3' | -53.3 | NC_005259.1 | + | 30004 | 0.68 | 0.743782 |
Target: 5'- gGUCACCacgaCAAGGUGAcCAccgccgggGCGGUGGg -3' miRNA: 3'- -UAGUGGcg--GUUCCACUaGU--------UGCCACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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