miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23455 5' -58.8 NC_005259.1 + 48179 0.77 0.140645
Target:  5'- cCGCCGCCGCCgGGUg--UCGGAcCGGGc -3'
miRNA:   3'- -GCGGUGGCGGgCCAaagAGCCU-GCUC- -5'
23455 5' -58.8 NC_005259.1 + 26800 0.77 0.153771
Target:  5'- gCGCCGCCGCCCGGUUggccgguaccggCGGugGuGc -3'
miRNA:   3'- -GCGGUGGCGGGCCAAaga---------GCCugCuC- -5'
23455 5' -58.8 NC_005259.1 + 53538 0.72 0.278721
Target:  5'- gGCuCGgUGCCCGGUgucggCUCGGGCGGu -3'
miRNA:   3'- gCG-GUgGCGGGCCAaa---GAGCCUGCUc -5'
23455 5' -58.8 NC_005259.1 + 14328 0.72 0.278721
Target:  5'- aCGCCGCCGCCCGcGUg---CGGGCc-- -3'
miRNA:   3'- -GCGGUGGCGGGC-CAaagaGCCUGcuc -5'
23455 5' -58.8 NC_005259.1 + 3285 0.72 0.30657
Target:  5'- cCGUCGCCGCcucgCCGGUccCUCGG-CGAGc -3'
miRNA:   3'- -GCGGUGGCG----GGCCAaaGAGCCuGCUC- -5'
23455 5' -58.8 NC_005259.1 + 22218 0.72 0.309469
Target:  5'- cCGCgCACCGCCgcgaggcuguCGGUUuccgucgacgcauucUCUgGGACGAGg -3'
miRNA:   3'- -GCG-GUGGCGG----------GCCAA---------------AGAgCCUGCUC- -5'
23455 5' -58.8 NC_005259.1 + 56271 0.71 0.328822
Target:  5'- gCGCCGCCGCCCGGcccguaUCGGcACcAGc -3'
miRNA:   3'- -GCGGUGGCGGGCCaaag--AGCC-UGcUC- -5'
23455 5' -58.8 NC_005259.1 + 58298 0.71 0.351445
Target:  5'- gGCCagcggauACCGCCaCGGUUgauggugaUCUCGGgcaGCGAGa -3'
miRNA:   3'- gCGG-------UGGCGG-GCCAA--------AGAGCC---UGCUC- -5'
23455 5' -58.8 NC_005259.1 + 51741 0.7 0.393842
Target:  5'- gGCCACCGCCaCGcucucggcagcGUUgcgCUCGG-CGAGc -3'
miRNA:   3'- gCGGUGGCGG-GC-----------CAAa--GAGCCuGCUC- -5'
23455 5' -58.8 NC_005259.1 + 44526 0.7 0.411349
Target:  5'- aCGCCGCCGCCCGGcaguccaCUCaugcCGAGa -3'
miRNA:   3'- -GCGGUGGCGGGCCaaa----GAGccu-GCUC- -5'
23455 5' -58.8 NC_005259.1 + 15970 0.69 0.447767
Target:  5'- aGUCGCCGCCCaGU---UCGGuCGAGu -3'
miRNA:   3'- gCGGUGGCGGGcCAaagAGCCuGCUC- -5'
23455 5' -58.8 NC_005259.1 + 29940 0.69 0.447767
Target:  5'- cCGCCACgCgGCCCGGUcgCggcUGGugGGGc -3'
miRNA:   3'- -GCGGUG-G-CGGGCCAaaGa--GCCugCUC- -5'
23455 5' -58.8 NC_005259.1 + 39901 0.69 0.447767
Target:  5'- uCGCCGCCGCCCGc---CUCGauccguCGAGg -3'
miRNA:   3'- -GCGGUGGCGGGCcaaaGAGCcu----GCUC- -5'
23455 5' -58.8 NC_005259.1 + 13098 0.69 0.447767
Target:  5'- uGCCACCGacCCCGGcccgCUCGG-CGGc -3'
miRNA:   3'- gCGGUGGC--GGGCCaaa-GAGCCuGCUc -5'
23455 5' -58.8 NC_005259.1 + 45514 0.69 0.457148
Target:  5'- gGCCACCGCgCCGGUg--UUGGccgccguggcuGCGAGc -3'
miRNA:   3'- gCGGUGGCG-GGCCAaagAGCC-----------UGCUC- -5'
23455 5' -58.8 NC_005259.1 + 20167 0.68 0.47622
Target:  5'- gGCCACCgcGCCCGccgcCUCGGcugACGAGa -3'
miRNA:   3'- gCGGUGG--CGGGCcaaaGAGCC---UGCUC- -5'
23455 5' -58.8 NC_005259.1 + 60153 0.68 0.485903
Target:  5'- gGCCGCCGCCucagCGGccUCaCGGGCGGc -3'
miRNA:   3'- gCGGUGGCGG----GCCaaAGaGCCUGCUc -5'
23455 5' -58.8 NC_005259.1 + 50751 0.68 0.505543
Target:  5'- aGCCGCCaCgCGGUg--UCGGACGAc -3'
miRNA:   3'- gCGGUGGcGgGCCAaagAGCCUGCUc -5'
23455 5' -58.8 NC_005259.1 + 52962 0.68 0.5225
Target:  5'- cCGCCGCUGCCCGGcugcaUCGGcaagcaugugcauuGCGGc -3'
miRNA:   3'- -GCGGUGGCGGGCCaaag-AGCC--------------UGCUc -5'
23455 5' -58.8 NC_005259.1 + 45423 0.68 0.525516
Target:  5'- cCGCCGCCGCugccucguaggCCGGa-UCUCGGuccuugauCGGGg -3'
miRNA:   3'- -GCGGUGGCG-----------GGCCaaAGAGCCu-------GCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.