miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23456 3' -60.7 NC_005259.1 + 37228 0.66 0.479307
Target:  5'- --cGGGGCGCUggccCGUGCCGGauuggcuGCCg--- -3'
miRNA:   3'- uaaUCCCGCGA----GCGCGGCC-------CGGaacu -5'
23456 3' -60.7 NC_005259.1 + 19859 0.66 0.441895
Target:  5'- -gUGuGGCGCUCGCGCCc-GCCggGAu -3'
miRNA:   3'- uaAUcCCGCGAGCGCGGccCGGaaCU- -5'
23456 3' -60.7 NC_005259.1 + 30147 0.67 0.423362
Target:  5'- ---cGGGCaGCUCGa-CCGGGCCg--- -3'
miRNA:   3'- uaauCCCG-CGAGCgcGGCCCGGaacu -5'
23456 3' -60.7 NC_005259.1 + 58777 0.67 0.402635
Target:  5'- ---cGGGCGCUgUGCGCCGGucgaggcggugauuGCCUcGGc -3'
miRNA:   3'- uaauCCCGCGA-GCGCGGCC--------------CGGAaCU- -5'
23456 3' -60.7 NC_005259.1 + 58937 0.67 0.387734
Target:  5'- ---cGGGCGCgguggcaGCGUCGG-CCUUGGc -3'
miRNA:   3'- uaauCCCGCGag-----CGCGGCCcGGAACU- -5'
23456 3' -60.7 NC_005259.1 + 45631 0.68 0.346064
Target:  5'- ---cGGGCcggGCagCGCGCCGGuGCCgccgUGAa -3'
miRNA:   3'- uaauCCCG---CGa-GCGCGGCC-CGGa---ACU- -5'
23456 3' -60.7 NC_005259.1 + 11441 0.68 0.338124
Target:  5'- cUUGGGcCGCUCGCugccGCCGGuGCCUa-- -3'
miRNA:   3'- uAAUCCcGCGAGCG----CGGCC-CGGAacu -5'
23456 3' -60.7 NC_005259.1 + 50400 0.69 0.322646
Target:  5'- ---cGGcuCGCcgagCGCGCCGGuGCCUUGAc -3'
miRNA:   3'- uaauCCc-GCGa---GCGCGGCC-CGGAACU- -5'
23456 3' -60.7 NC_005259.1 + 16489 0.69 0.286289
Target:  5'- --aAGGGCGCacccgCGCGCauGGCCgaGAg -3'
miRNA:   3'- uaaUCCCGCGa----GCGCGgcCCGGaaCU- -5'
23456 3' -60.7 NC_005259.1 + 17760 0.71 0.206955
Target:  5'- --gAGGcCGCcgCGCGCCGGGCCg--- -3'
miRNA:   3'- uaaUCCcGCGa-GCGCGGCCCGGaacu -5'
23456 3' -60.7 NC_005259.1 + 8804 0.73 0.172635
Target:  5'- ----uGGCGaggaucuuCUCGCGCCGGGCCggUGAg -3'
miRNA:   3'- uaaucCCGC--------GAGCGCGGCCCGGa-ACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.