miRNA display CGI


Results 41 - 47 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23456 5' -50.7 NC_005259.1 + 61492 0.73 0.668072
Target:  5'- uGUCGCGACCGuuGAGG-CGCuCGGUGu -3'
miRNA:   3'- cCAGUGCUGGCugUUCUaGCG-GUUAC- -5'
23456 5' -50.7 NC_005259.1 + 16826 0.73 0.668072
Target:  5'- gGGUCAUGAuCCGACAcaaggcGGGUgGCCAu-- -3'
miRNA:   3'- -CCAGUGCU-GGCUGU------UCUAgCGGUuac -5'
23456 5' -50.7 NC_005259.1 + 45111 0.73 0.67908
Target:  5'- cGGUCGgGccgagagugguGCCGACGAGGUCGgCAAUc -3'
miRNA:   3'- -CCAGUgC-----------UGGCUGUUCUAGCgGUUAc -5'
23456 5' -50.7 NC_005259.1 + 6448 0.74 0.601673
Target:  5'- cGUCGCgcuGAUCGGCAGcGUCGCCGGUGc -3'
miRNA:   3'- cCAGUG---CUGGCUGUUcUAGCGGUUAC- -5'
23456 5' -50.7 NC_005259.1 + 40018 0.75 0.54696
Target:  5'- gGGUC-UGACCGGgacgugaugcuuUGAGGUCGCCGGUGa -3'
miRNA:   3'- -CCAGuGCUGGCU------------GUUCUAGCGGUUAC- -5'
23456 5' -50.7 NC_005259.1 + 50395 0.76 0.48359
Target:  5'- uGUCGCGGCuCGcCGAGcgCGCCGGUGc -3'
miRNA:   3'- cCAGUGCUG-GCuGUUCuaGCGGUUAC- -5'
23456 5' -50.7 NC_005259.1 + 20182 0.77 0.463246
Target:  5'- cGcCuCGGCUGACGAGAUCGCCGGUu -3'
miRNA:   3'- cCaGuGCUGGCUGUUCUAGCGGUUAc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.