miRNA display CGI


Results 21 - 40 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23456 5' -50.7 NC_005259.1 + 38798 0.69 0.874581
Target:  5'- --cCGCuGCCGAUGAGAUCGCCcgcgcccgcGAUGa -3'
miRNA:   3'- ccaGUGcUGGCUGUUCUAGCGG---------UUAC- -5'
23456 5' -50.7 NC_005259.1 + 61886 0.69 0.866611
Target:  5'- -aUCACGACCucGAUAucagggguuAGGUCGCCGGUc -3'
miRNA:   3'- ccAGUGCUGG--CUGU---------UCUAGCGGUUAc -5'
23456 5' -50.7 NC_005259.1 + 3165 0.69 0.858394
Target:  5'- cGGUgAUGcCCGGCGaugucaAGGUCGUCGGUGc -3'
miRNA:   3'- -CCAgUGCuGGCUGU------UCUAGCGGUUAC- -5'
23456 5' -50.7 NC_005259.1 + 20018 0.69 0.858394
Target:  5'- aGUCAUGACCGAggacgggcuCAAGAcCGUCAAg- -3'
miRNA:   3'- cCAGUGCUGGCU---------GUUCUaGCGGUUac -5'
23456 5' -50.7 NC_005259.1 + 67829 0.68 0.90386
Target:  5'- uGUCcuCGACCGGCAgcccggugagcGGGUCGaCCAAUc -3'
miRNA:   3'- cCAGu-GCUGGCUGU-----------UCUAGC-GGUUAc -5'
23456 5' -50.7 NC_005259.1 + 9716 0.68 0.90386
Target:  5'- cGUCcucgGGCCGGuCGAGcUCGCCGAUGu -3'
miRNA:   3'- cCAGug--CUGGCU-GUUCuAGCGGUUAC- -5'
23456 5' -50.7 NC_005259.1 + 2591 0.68 0.90386
Target:  5'- cGUCGCGACgagGACAcGAUCuCCGGUGu -3'
miRNA:   3'- cCAGUGCUGg--CUGUuCUAGcGGUUAC- -5'
23456 5' -50.7 NC_005259.1 + 57954 0.68 0.90386
Target:  5'- aGGcCAUGGCCcccaugguCGAGGUCGCCGGg- -3'
miRNA:   3'- -CCaGUGCUGGcu------GUUCUAGCGGUUac -5'
23456 5' -50.7 NC_005259.1 + 67406 0.68 0.896941
Target:  5'- uGUCACgGGCCGACAccaucGGggUGCCGGg- -3'
miRNA:   3'- cCAGUG-CUGGCUGU-----UCuaGCGGUUac -5'
23456 5' -50.7 NC_005259.1 + 24429 0.68 0.896941
Target:  5'- aGGaaGCGACagcgGGCAAGAUCGaCCGAa- -3'
miRNA:   3'- -CCagUGCUGg---CUGUUCUAGC-GGUUac -5'
23456 5' -50.7 NC_005259.1 + 41299 0.67 0.944519
Target:  5'- cGUCACGAuCCGugagcGCGAGGUCGaCCu--- -3'
miRNA:   3'- cCAGUGCU-GGC-----UGUUCUAGC-GGuuac -5'
23456 5' -50.7 NC_005259.1 + 57680 0.67 0.939548
Target:  5'- cGGcCAauCGACCGugGccAGGUUGCCGGg- -3'
miRNA:   3'- -CCaGU--GCUGGCugU--UCUAGCGGUUac -5'
23456 5' -50.7 NC_005259.1 + 55180 0.67 0.934299
Target:  5'- cGGUCACGACCGuuGCGAuGAUgcacaCGaCCAGc- -3'
miRNA:   3'- -CCAGUGCUGGC--UGUU-CUA-----GC-GGUUac -5'
23456 5' -50.7 NC_005259.1 + 49731 0.67 0.934299
Target:  5'- ---gGCGGgCGGCGAGAgcugcUCGUCAGUGa -3'
miRNA:   3'- ccagUGCUgGCUGUUCU-----AGCGGUUAC- -5'
23456 5' -50.7 NC_005259.1 + 46531 0.67 0.928771
Target:  5'- cGGUCGgGgaucGCCGAgAucuGGUCGCCGAc- -3'
miRNA:   3'- -CCAGUgC----UGGCUgUu--CUAGCGGUUac -5'
23456 5' -50.7 NC_005259.1 + 36423 0.67 0.922962
Target:  5'- gGGUCAUGGuCUGcGCAGcGUCGCCGAg- -3'
miRNA:   3'- -CCAGUGCU-GGC-UGUUcUAGCGGUUac -5'
23456 5' -50.7 NC_005259.1 + 13830 0.66 0.965327
Target:  5'- cGUgAUGACCGACGGGcacAUUGCCc--- -3'
miRNA:   3'- cCAgUGCUGGCUGUUC---UAGCGGuuac -5'
23456 5' -50.7 NC_005259.1 + 30003 0.66 0.949215
Target:  5'- uGGUCACca-CGACAAGGUgaccacCGCCGGg- -3'
miRNA:   3'- -CCAGUGcugGCUGUUCUA------GCGGUUac -5'
23456 5' -50.7 NC_005259.1 + 9682 0.66 0.953639
Target:  5'- --gCGCuGCCGGuCGAGGUCGCCGc-- -3'
miRNA:   3'- ccaGUGcUGGCU-GUUCUAGCGGUuac -5'
23456 5' -50.7 NC_005259.1 + 15253 0.66 0.953639
Target:  5'- -aUCugGACCGcuaccuCAaucAGGUCGCCGAc- -3'
miRNA:   3'- ccAGugCUGGCu-----GU---UCUAGCGGUUac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.