Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23456 | 5' | -50.7 | NC_005259.1 | + | 57954 | 0.68 | 0.90386 |
Target: 5'- aGGcCAUGGCCcccaugguCGAGGUCGCCGGg- -3' miRNA: 3'- -CCaGUGCUGGcu------GUUCUAGCGGUUac -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 24429 | 0.68 | 0.896941 |
Target: 5'- aGGaaGCGACagcgGGCAAGAUCGaCCGAa- -3' miRNA: 3'- -CCagUGCUGg---CUGUUCUAGC-GGUUac -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 67406 | 0.68 | 0.896941 |
Target: 5'- uGUCACgGGCCGACAccaucGGggUGCCGGg- -3' miRNA: 3'- cCAGUG-CUGGCUGU-----UCuaGCGGUUac -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 38798 | 0.69 | 0.874581 |
Target: 5'- --cCGCuGCCGAUGAGAUCGCCcgcgcccgcGAUGa -3' miRNA: 3'- ccaGUGcUGGCUGUUCUAGCGG---------UUAC- -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 61886 | 0.69 | 0.866611 |
Target: 5'- -aUCACGACCucGAUAucagggguuAGGUCGCCGGUc -3' miRNA: 3'- ccAGUGCUGG--CUGU---------UCUAGCGGUUAc -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 3165 | 0.69 | 0.858394 |
Target: 5'- cGGUgAUGcCCGGCGaugucaAGGUCGUCGGUGc -3' miRNA: 3'- -CCAgUGCuGGCUGU------UCUAGCGGUUAC- -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 20018 | 0.69 | 0.858394 |
Target: 5'- aGUCAUGACCGAggacgggcuCAAGAcCGUCAAg- -3' miRNA: 3'- cCAGUGCUGGCU---------GUUCUaGCGGUUac -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 53240 | 0.7 | 0.841249 |
Target: 5'- aGGuUCGCGccGCCGACAccGUCGCCGc-- -3' miRNA: 3'- -CC-AGUGC--UGGCUGUucUAGCGGUuac -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 27066 | 0.71 | 0.794658 |
Target: 5'- cGGUCACGG-CGACA---UCGCCGAc- -3' miRNA: 3'- -CCAGUGCUgGCUGUucuAGCGGUUac -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 29269 | 0.71 | 0.784782 |
Target: 5'- cGUcCGCG-CCgugGACGAGAUCGCCAAc- -3' miRNA: 3'- cCA-GUGCuGG---CUGUUCUAGCGGUUac -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 53909 | 0.71 | 0.784782 |
Target: 5'- uGGUCGCGgaaACCGACGggcAGAUCGUUGGc- -3' miRNA: 3'- -CCAGUGC---UGGCUGU---UCUAGCGGUUac -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 39123 | 0.71 | 0.781787 |
Target: 5'- cGUCACGAcaucggugagcugcCCGAUguGAUCGCCGAc- -3' miRNA: 3'- cCAGUGCU--------------GGCUGuuCUAGCGGUUac -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 1805 | 0.71 | 0.774744 |
Target: 5'- uGUCAUGGCCGACGcGAgcaauccCGCCGAc- -3' miRNA: 3'- cCAGUGCUGGCUGUuCUa------GCGGUUac -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 28768 | 0.71 | 0.764557 |
Target: 5'- cGUCGCcgguGCCGACGAGGUaccCGCCGGUc -3' miRNA: 3'- cCAGUGc---UGGCUGUUCUA---GCGGUUAc -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 52571 | 0.71 | 0.764557 |
Target: 5'- uGGUCGaccgGACCGGCcuGAGcGUCGCCGAg- -3' miRNA: 3'- -CCAGUg---CUGGCUG--UUC-UAGCGGUUac -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 8061 | 0.72 | 0.722548 |
Target: 5'- cGGUCGCcGCCGACAucgAGAUCGUg---- -3' miRNA: 3'- -CCAGUGcUGGCUGU---UCUAGCGguuac -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 63846 | 0.72 | 0.690043 |
Target: 5'- aGGcaagCGCGuACCGGCGAGGUgGCCGGcUGg -3' miRNA: 3'- -CCa---GUGC-UGGCUGUUCUAgCGGUU-AC- -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 35265 | 0.72 | 0.690043 |
Target: 5'- -uUCGCGcccGCCGcgcCGGGGUCGCCGAUGu -3' miRNA: 3'- ccAGUGC---UGGCu--GUUCUAGCGGUUAC- -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 45111 | 0.73 | 0.67908 |
Target: 5'- cGGUCGgGccgagagugguGCCGACGAGGUCGgCAAUc -3' miRNA: 3'- -CCAGUgC-----------UGGCUGUUCUAGCgGUUAc -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 16826 | 0.73 | 0.668072 |
Target: 5'- gGGUCAUGAuCCGACAcaaggcGGGUgGCCAu-- -3' miRNA: 3'- -CCAGUGCU-GGCUGU------UCUAgCGGUuac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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