Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 23456 | 5' | -50.7 | NC_005259.1 | + | 61492 | 0.73 | 0.668072 |
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Target: 5'- uGUCGCGACCGuuGAGG-CGCuCGGUGu -3' miRNA: 3'- cCAGUGCUGGCugUUCUaGCG-GUUAC- -5' |
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| 23456 | 5' | -50.7 | NC_005259.1 | + | 21271 | 0.73 | 0.645963 |
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Target: 5'- uGGUCGuCGGCCuGACGAGcagGCCGAUGa -3' miRNA: 3'- -CCAGU-GCUGG-CUGUUCuagCGGUUAC- -5' |
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| 23456 | 5' | -50.7 | NC_005259.1 | + | 19867 | 0.73 | 0.634884 |
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Target: 5'- -cUCGCGcCCGcCGGGAUCGCCGAc- -3' miRNA: 3'- ccAGUGCuGGCuGUUCUAGCGGUUac -5' |
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| 23456 | 5' | -50.7 | NC_005259.1 | + | 6448 | 0.74 | 0.601673 |
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Target: 5'- cGUCGCgcuGAUCGGCAGcGUCGCCGGUGc -3' miRNA: 3'- cCAGUG---CUGGCUGUUcUAGCGGUUAC- -5' |
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| 23456 | 5' | -50.7 | NC_005259.1 | + | 40018 | 0.75 | 0.54696 |
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Target: 5'- gGGUC-UGACCGGgacgugaugcuuUGAGGUCGCCGGUGa -3' miRNA: 3'- -CCAGuGCUGGCU------------GUUCUAGCGGUUAC- -5' |
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| 23456 | 5' | -50.7 | NC_005259.1 | + | 50395 | 0.76 | 0.48359 |
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Target: 5'- uGUCGCGGCuCGcCGAGcgCGCCGGUGc -3' miRNA: 3'- cCAGUGCUG-GCuGUUCuaGCGGUUAC- -5' |
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| 23456 | 5' | -50.7 | NC_005259.1 | + | 20182 | 0.77 | 0.463246 |
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Target: 5'- cGcCuCGGCUGACGAGAUCGCCGGUu -3' miRNA: 3'- cCaGuGCUGGCUGUUCUAGCGGUUAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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