miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23456 5' -50.7 NC_005259.1 + 1805 0.71 0.774744
Target:  5'- uGUCAUGGCCGACGcGAgcaauccCGCCGAc- -3'
miRNA:   3'- cCAGUGCUGGCUGUuCUa------GCGGUUac -5'
23456 5' -50.7 NC_005259.1 + 2591 0.68 0.90386
Target:  5'- cGUCGCGACgagGACAcGAUCuCCGGUGu -3'
miRNA:   3'- cCAGUGCUGg--CUGUuCUAGcGGUUAC- -5'
23456 5' -50.7 NC_005259.1 + 2733 0.66 0.961689
Target:  5'- --aCACcACCGAugcCGAGGUCGCCGucGUGc -3'
miRNA:   3'- ccaGUGcUGGCU---GUUCUAGCGGU--UAC- -5'
23456 5' -50.7 NC_005259.1 + 3073 0.66 0.961689
Target:  5'- gGGcCGaGGCCGACAAGAgagccgCGCagCGAUGa -3'
miRNA:   3'- -CCaGUgCUGGCUGUUCUa-----GCG--GUUAC- -5'
23456 5' -50.7 NC_005259.1 + 3165 0.69 0.858394
Target:  5'- cGGUgAUGcCCGGCGaugucaAGGUCGUCGGUGc -3'
miRNA:   3'- -CCAgUGCuGGCUGU------UCUAGCGGUUAC- -5'
23456 5' -50.7 NC_005259.1 + 6448 0.74 0.601673
Target:  5'- cGUCGCgcuGAUCGGCAGcGUCGCCGGUGc -3'
miRNA:   3'- cCAGUG---CUGGCUGUUcUAGCGGUUAC- -5'
23456 5' -50.7 NC_005259.1 + 8061 0.72 0.722548
Target:  5'- cGGUCGCcGCCGACAucgAGAUCGUg---- -3'
miRNA:   3'- -CCAGUGcUGGCUGU---UCUAGCGguuac -5'
23456 5' -50.7 NC_005259.1 + 9682 0.66 0.953639
Target:  5'- --gCGCuGCCGGuCGAGGUCGCCGc-- -3'
miRNA:   3'- ccaGUGcUGGCU-GUUCUAGCGGUuac -5'
23456 5' -50.7 NC_005259.1 + 9716 0.68 0.90386
Target:  5'- cGUCcucgGGCCGGuCGAGcUCGCCGAUGu -3'
miRNA:   3'- cCAGug--CUGGCU-GUUCuAGCGGUUAC- -5'
23456 5' -50.7 NC_005259.1 + 13830 0.66 0.965327
Target:  5'- cGUgAUGACCGACGGGcacAUUGCCc--- -3'
miRNA:   3'- cCAgUGCUGGCUGUUC---UAGCGGuuac -5'
23456 5' -50.7 NC_005259.1 + 15253 0.66 0.953639
Target:  5'- -aUCugGACCGcuaccuCAaucAGGUCGCCGAc- -3'
miRNA:   3'- ccAGugCUGGCu-----GU---UCUAGCGGUUac -5'
23456 5' -50.7 NC_005259.1 + 16721 0.66 0.949215
Target:  5'- aGGUCGCGcucugccucGCCacgcuCAAGAUCGCCc--- -3'
miRNA:   3'- -CCAGUGC---------UGGcu---GUUCUAGCGGuuac -5'
23456 5' -50.7 NC_005259.1 + 16826 0.73 0.668072
Target:  5'- gGGUCAUGAuCCGACAcaaggcGGGUgGCCAu-- -3'
miRNA:   3'- -CCAGUGCU-GGCUGU------UCUAgCGGUuac -5'
23456 5' -50.7 NC_005259.1 + 17341 0.66 0.957795
Target:  5'- cGGUCaACGucGCCGuCGAGGUCGgCGGc- -3'
miRNA:   3'- -CCAG-UGC--UGGCuGUUCUAGCgGUUac -5'
23456 5' -50.7 NC_005259.1 + 19688 0.66 0.965327
Target:  5'- aGGUCGgGAUCGAgCAGGcUCGCaCGuUGg -3'
miRNA:   3'- -CCAGUgCUGGCU-GUUCuAGCG-GUuAC- -5'
23456 5' -50.7 NC_005259.1 + 19867 0.73 0.634884
Target:  5'- -cUCGCGcCCGcCGGGAUCGCCGAc- -3'
miRNA:   3'- ccAGUGCuGGCuGUUCUAGCGGUUac -5'
23456 5' -50.7 NC_005259.1 + 20018 0.69 0.858394
Target:  5'- aGUCAUGACCGAggacgggcuCAAGAcCGUCAAg- -3'
miRNA:   3'- cCAGUGCUGGCU---------GUUCUaGCGGUUac -5'
23456 5' -50.7 NC_005259.1 + 20182 0.77 0.463246
Target:  5'- cGcCuCGGCUGACGAGAUCGCCGGUu -3'
miRNA:   3'- cCaGuGCUGGCUGUUCUAGCGGUUAc -5'
23456 5' -50.7 NC_005259.1 + 21036 0.66 0.965327
Target:  5'- ---gAUGACCGGCGcgcguucaAGGUCGCCGc-- -3'
miRNA:   3'- ccagUGCUGGCUGU--------UCUAGCGGUuac -5'
23456 5' -50.7 NC_005259.1 + 21271 0.73 0.645963
Target:  5'- uGGUCGuCGGCCuGACGAGcagGCCGAUGa -3'
miRNA:   3'- -CCAGU-GCUGG-CUGUUCuagCGGUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.