miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23456 5' -50.7 NC_005259.1 + 24429 0.68 0.896941
Target:  5'- aGGaaGCGACagcgGGCAAGAUCGaCCGAa- -3'
miRNA:   3'- -CCagUGCUGg---CUGUUCUAGC-GGUUac -5'
23456 5' -50.7 NC_005259.1 + 27066 0.71 0.794658
Target:  5'- cGGUCACGG-CGACA---UCGCCGAc- -3'
miRNA:   3'- -CCAGUGCUgGCUGUucuAGCGGUUac -5'
23456 5' -50.7 NC_005259.1 + 27996 0.66 0.957795
Target:  5'- uGGU-GCGgguGCCGggGCGGGGUCGCCGGg- -3'
miRNA:   3'- -CCAgUGC---UGGC--UGUUCUAGCGGUUac -5'
23456 5' -50.7 NC_005259.1 + 28768 0.71 0.764557
Target:  5'- cGUCGCcgguGCCGACGAGGUaccCGCCGGUc -3'
miRNA:   3'- cCAGUGc---UGGCUGUUCUA---GCGGUUAc -5'
23456 5' -50.7 NC_005259.1 + 29269 0.71 0.784782
Target:  5'- cGUcCGCG-CCgugGACGAGAUCGCCAAc- -3'
miRNA:   3'- cCA-GUGCuGG---CUGUUCUAGCGGUUac -5'
23456 5' -50.7 NC_005259.1 + 30003 0.66 0.949215
Target:  5'- uGGUCACca-CGACAAGGUgaccacCGCCGGg- -3'
miRNA:   3'- -CCAGUGcugGCUGUUCUA------GCGGUUac -5'
23456 5' -50.7 NC_005259.1 + 35265 0.72 0.690043
Target:  5'- -uUCGCGcccGCCGcgcCGGGGUCGCCGAUGu -3'
miRNA:   3'- ccAGUGC---UGGCu--GUUCUAGCGGUUAC- -5'
23456 5' -50.7 NC_005259.1 + 36423 0.67 0.922962
Target:  5'- gGGUCAUGGuCUGcGCAGcGUCGCCGAg- -3'
miRNA:   3'- -CCAGUGCU-GGC-UGUUcUAGCGGUUac -5'
23456 5' -50.7 NC_005259.1 + 38798 0.69 0.874581
Target:  5'- --cCGCuGCCGAUGAGAUCGCCcgcgcccgcGAUGa -3'
miRNA:   3'- ccaGUGcUGGCUGUUCUAGCGG---------UUAC- -5'
23456 5' -50.7 NC_005259.1 + 39123 0.71 0.781787
Target:  5'- cGUCACGAcaucggugagcugcCCGAUguGAUCGCCGAc- -3'
miRNA:   3'- cCAGUGCU--------------GGCUGuuCUAGCGGUUac -5'
23456 5' -50.7 NC_005259.1 + 40018 0.75 0.54696
Target:  5'- gGGUC-UGACCGGgacgugaugcuuUGAGGUCGCCGGUGa -3'
miRNA:   3'- -CCAGuGCUGGCU------------GUUCUAGCGGUUAC- -5'
23456 5' -50.7 NC_005259.1 + 41299 0.67 0.944519
Target:  5'- cGUCACGAuCCGugagcGCGAGGUCGaCCu--- -3'
miRNA:   3'- cCAGUGCU-GGC-----UGUUCUAGC-GGuuac -5'
23456 5' -50.7 NC_005259.1 + 45111 0.73 0.67908
Target:  5'- cGGUCGgGccgagagugguGCCGACGAGGUCGgCAAUc -3'
miRNA:   3'- -CCAGUgC-----------UGGCUGUUCUAGCgGUUAc -5'
23456 5' -50.7 NC_005259.1 + 46531 0.67 0.928771
Target:  5'- cGGUCGgGgaucGCCGAgAucuGGUCGCCGAc- -3'
miRNA:   3'- -CCAGUgC----UGGCUgUu--CUAGCGGUUac -5'
23456 5' -50.7 NC_005259.1 + 49731 0.67 0.934299
Target:  5'- ---gGCGGgCGGCGAGAgcugcUCGUCAGUGa -3'
miRNA:   3'- ccagUGCUgGCUGUUCU-----AGCGGUUAC- -5'
23456 5' -50.7 NC_005259.1 + 50395 0.76 0.48359
Target:  5'- uGUCGCGGCuCGcCGAGcgCGCCGGUGc -3'
miRNA:   3'- cCAGUGCUG-GCuGUUCuaGCGGUUAC- -5'
23456 5' -50.7 NC_005259.1 + 52571 0.71 0.764557
Target:  5'- uGGUCGaccgGACCGGCcuGAGcGUCGCCGAg- -3'
miRNA:   3'- -CCAGUg---CUGGCUG--UUC-UAGCGGUUac -5'
23456 5' -50.7 NC_005259.1 + 53240 0.7 0.841249
Target:  5'- aGGuUCGCGccGCCGACAccGUCGCCGc-- -3'
miRNA:   3'- -CC-AGUGC--UGGCUGUucUAGCGGUuac -5'
23456 5' -50.7 NC_005259.1 + 53909 0.71 0.784782
Target:  5'- uGGUCGCGgaaACCGACGggcAGAUCGUUGGc- -3'
miRNA:   3'- -CCAGUGC---UGGCUGU---UCUAGCGGUUac -5'
23456 5' -50.7 NC_005259.1 + 55180 0.67 0.934299
Target:  5'- cGGUCACGACCGuuGCGAuGAUgcacaCGaCCAGc- -3'
miRNA:   3'- -CCAGUGCUGGC--UGUU-CUA-----GC-GGUUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.