Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23456 | 5' | -50.7 | NC_005259.1 | + | 13830 | 0.66 | 0.965327 |
Target: 5'- cGUgAUGACCGACGGGcacAUUGCCc--- -3' miRNA: 3'- cCAgUGCUGGCUGUUC---UAGCGGuuac -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 28768 | 0.71 | 0.764557 |
Target: 5'- cGUCGCcgguGCCGACGAGGUaccCGCCGGUc -3' miRNA: 3'- cCAGUGc---UGGCUGUUCUA---GCGGUUAc -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 52571 | 0.71 | 0.764557 |
Target: 5'- uGGUCGaccgGACCGGCcuGAGcGUCGCCGAg- -3' miRNA: 3'- -CCAGUg---CUGGCUG--UUC-UAGCGGUUac -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 1805 | 0.71 | 0.774744 |
Target: 5'- uGUCAUGGCCGACGcGAgcaauccCGCCGAc- -3' miRNA: 3'- cCAGUGCUGGCUGUuCUa------GCGGUUac -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 39123 | 0.71 | 0.781787 |
Target: 5'- cGUCACGAcaucggugagcugcCCGAUguGAUCGCCGAc- -3' miRNA: 3'- cCAGUGCU--------------GGCUGuuCUAGCGGUUac -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 29269 | 0.71 | 0.784782 |
Target: 5'- cGUcCGCG-CCgugGACGAGAUCGCCAAc- -3' miRNA: 3'- cCA-GUGCuGG---CUGUUCUAGCGGUUac -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 53909 | 0.71 | 0.784782 |
Target: 5'- uGGUCGCGgaaACCGACGggcAGAUCGUUGGc- -3' miRNA: 3'- -CCAGUGC---UGGCUGU---UCUAGCGGUUac -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 27066 | 0.71 | 0.794658 |
Target: 5'- cGGUCACGG-CGACA---UCGCCGAc- -3' miRNA: 3'- -CCAGUGCUgGCUGUucuAGCGGUUac -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 53240 | 0.7 | 0.841249 |
Target: 5'- aGGuUCGCGccGCCGACAccGUCGCCGc-- -3' miRNA: 3'- -CC-AGUGC--UGGCUGUucUAGCGGUuac -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 8061 | 0.72 | 0.722548 |
Target: 5'- cGGUCGCcGCCGACAucgAGAUCGUg---- -3' miRNA: 3'- -CCAGUGcUGGCUGU---UCUAGCGguuac -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 35265 | 0.72 | 0.690043 |
Target: 5'- -uUCGCGcccGCCGcgcCGGGGUCGCCGAUGu -3' miRNA: 3'- ccAGUGC---UGGCu--GUUCUAGCGGUUAC- -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 63846 | 0.72 | 0.690043 |
Target: 5'- aGGcaagCGCGuACCGGCGAGGUgGCCGGcUGg -3' miRNA: 3'- -CCa---GUGC-UGGCUGUUCUAgCGGUU-AC- -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 50395 | 0.76 | 0.48359 |
Target: 5'- uGUCGCGGCuCGcCGAGcgCGCCGGUGc -3' miRNA: 3'- cCAGUGCUG-GCuGUUCuaGCGGUUAC- -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 40018 | 0.75 | 0.54696 |
Target: 5'- gGGUC-UGACCGGgacgugaugcuuUGAGGUCGCCGGUGa -3' miRNA: 3'- -CCAGuGCUGGCU------------GUUCUAGCGGUUAC- -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 6448 | 0.74 | 0.601673 |
Target: 5'- cGUCGCgcuGAUCGGCAGcGUCGCCGGUGc -3' miRNA: 3'- cCAGUG---CUGGCUGUUcUAGCGGUUAC- -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 19867 | 0.73 | 0.634884 |
Target: 5'- -cUCGCGcCCGcCGGGAUCGCCGAc- -3' miRNA: 3'- ccAGUGCuGGCuGUUCUAGCGGUUac -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 21271 | 0.73 | 0.645963 |
Target: 5'- uGGUCGuCGGCCuGACGAGcagGCCGAUGa -3' miRNA: 3'- -CCAGU-GCUGG-CUGUUCuagCGGUUAC- -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 61492 | 0.73 | 0.668072 |
Target: 5'- uGUCGCGACCGuuGAGG-CGCuCGGUGu -3' miRNA: 3'- cCAGUGCUGGCugUUCUaGCG-GUUAC- -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 16826 | 0.73 | 0.668072 |
Target: 5'- gGGUCAUGAuCCGACAcaaggcGGGUgGCCAu-- -3' miRNA: 3'- -CCAGUGCU-GGCUGU------UCUAgCGGUuac -5' |
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23456 | 5' | -50.7 | NC_005259.1 | + | 45111 | 0.73 | 0.67908 |
Target: 5'- cGGUCGgGccgagagugguGCCGACGAGGUCGgCAAUc -3' miRNA: 3'- -CCAGUgC-----------UGGCUGUUCUAGCgGUUAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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