Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23459 | 3' | -49.9 | NC_005259.1 | + | 10940 | 0.66 | 0.970853 |
Target: 5'- aCUCGGUGUCGacCUCGucggUGUCGGUc -3' miRNA: 3'- cGAGCUAUAGCa-GAGCua--GUAGCCGu -5' |
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23459 | 3' | -49.9 | NC_005259.1 | + | 8692 | 0.66 | 0.967607 |
Target: 5'- cCUCGAUGUCGcUgUCGAggUCGUC-GCGg -3' miRNA: 3'- cGAGCUAUAGC-AgAGCU--AGUAGcCGU- -5' |
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23459 | 3' | -49.9 | NC_005259.1 | + | 61509 | 0.66 | 0.964112 |
Target: 5'- cGCUCGGUGUgcCGg-UCGAccUCGUCGGgAa -3' miRNA: 3'- -CGAGCUAUA--GCagAGCU--AGUAGCCgU- -5' |
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23459 | 3' | -49.9 | NC_005259.1 | + | 64537 | 0.67 | 0.961515 |
Target: 5'- aGCUCGuccucagccgCGUcCUCGAUCucgauuuccucgguGUCGGCGa -3' miRNA: 3'- -CGAGCuaua------GCA-GAGCUAG--------------UAGCCGU- -5' |
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23459 | 3' | -49.9 | NC_005259.1 | + | 22111 | 0.67 | 0.956351 |
Target: 5'- uUUCGAgGUCGacccCUCGAUCccgcgcagccacGUCGGCAu -3' miRNA: 3'- cGAGCUaUAGCa---GAGCUAG------------UAGCCGU- -5' |
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23459 | 3' | -49.9 | NC_005259.1 | + | 62986 | 0.67 | 0.952071 |
Target: 5'- cCUCGcgcGUCGaCUCGAUggCAUUGGCAg -3' miRNA: 3'- cGAGCua-UAGCaGAGCUA--GUAGCCGU- -5' |
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23459 | 3' | -49.9 | NC_005259.1 | + | 55014 | 0.67 | 0.947519 |
Target: 5'- cGCUUGGcgGUCGUCUCGG-CAcgGGCu -3' miRNA: 3'- -CGAGCUa-UAGCAGAGCUaGUagCCGu -5' |
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23459 | 3' | -49.9 | NC_005259.1 | + | 18696 | 0.67 | 0.947519 |
Target: 5'- uGCUUGAgcacggCGgucugacCUCGAUCAUCGGg- -3' miRNA: 3'- -CGAGCUaua---GCa------GAGCUAGUAGCCgu -5' |
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23459 | 3' | -49.9 | NC_005259.1 | + | 66465 | 0.68 | 0.931634 |
Target: 5'- aCUCGGUgacgcugguggcgGUgGUCUCGAUCAUgGGa- -3' miRNA: 3'- cGAGCUA-------------UAgCAGAGCUAGUAgCCgu -5' |
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23459 | 3' | -49.9 | NC_005259.1 | + | 52421 | 0.68 | 0.926513 |
Target: 5'- cGCUCGAcucgggCGguuucuccgagcUCUCGAUguUCGGCGg -3' miRNA: 3'- -CGAGCUaua---GC------------AGAGCUAguAGCCGU- -5' |
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23459 | 3' | -49.9 | NC_005259.1 | + | 61893 | 0.69 | 0.907786 |
Target: 5'- cCUCGAUAUCagggguuagGUCgccggUCG-UCGUCGGCAg -3' miRNA: 3'- cGAGCUAUAG---------CAG-----AGCuAGUAGCCGU- -5' |
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23459 | 3' | -49.9 | NC_005259.1 | + | 23634 | 0.69 | 0.893901 |
Target: 5'- gGCUCGGUGUgGUUUCGGcccgcCGaCGGCGa -3' miRNA: 3'- -CGAGCUAUAgCAGAGCUa----GUaGCCGU- -5' |
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23459 | 3' | -49.9 | NC_005259.1 | + | 56388 | 0.7 | 0.862913 |
Target: 5'- cGCgUCGGcugAUCGUCUCGAUgGUgccCGGCc -3' miRNA: 3'- -CG-AGCUa--UAGCAGAGCUAgUA---GCCGu -5' |
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23459 | 3' | -49.9 | NC_005259.1 | + | 8367 | 0.7 | 0.845909 |
Target: 5'- cGCUCGGcggCGgcCUCGG-CAUCGGCGa -3' miRNA: 3'- -CGAGCUauaGCa-GAGCUaGUAGCCGU- -5' |
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23459 | 3' | -49.9 | NC_005259.1 | + | 42746 | 0.7 | 0.837057 |
Target: 5'- uGCUUGAgcaggCGguUCUCGAUCugcUCGGCGg -3' miRNA: 3'- -CGAGCUaua--GC--AGAGCUAGu--AGCCGU- -5' |
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23459 | 3' | -49.9 | NC_005259.1 | + | 60106 | 0.71 | 0.827983 |
Target: 5'- aGCUCGAccagCGaCUCGA-UAUCGGCGg -3' miRNA: 3'- -CGAGCUaua-GCaGAGCUaGUAGCCGU- -5' |
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23459 | 3' | -49.9 | NC_005259.1 | + | 41074 | 0.71 | 0.822437 |
Target: 5'- gGCUCGAUGUCacgcagccggucguaGUCggCGGUCggCGGUAu -3' miRNA: 3'- -CGAGCUAUAG---------------CAGa-GCUAGuaGCCGU- -5' |
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23459 | 3' | -49.9 | NC_005259.1 | + | 58907 | 0.71 | 0.818698 |
Target: 5'- cCUCGGgcUCGUCggCGGUCuugucGUCGGCGg -3' miRNA: 3'- cGAGCUauAGCAGa-GCUAG-----UAGCCGU- -5' |
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23459 | 3' | -49.9 | NC_005259.1 | + | 15837 | 0.71 | 0.789677 |
Target: 5'- aGCUCGAUGUaCGgCUCGggCAUCGcCAa -3' miRNA: 3'- -CGAGCUAUA-GCaGAGCuaGUAGCcGU- -5' |
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23459 | 3' | -49.9 | NC_005259.1 | + | 16676 | 0.72 | 0.759141 |
Target: 5'- cCUCGAUGUgGUCggCGAUCcUgGGCAc -3' miRNA: 3'- cGAGCUAUAgCAGa-GCUAGuAgCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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