miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23459 5' -56.6 NC_005259.1 + 54512 0.71 0.448161
Target:  5'- -gCGGCGAUGUgGGGUGGCggGUCGa -3'
miRNA:   3'- uaGCCGCUGUAgCCCGCUGagUAGCc -5'
23459 5' -56.6 NC_005259.1 + 57027 0.66 0.747675
Target:  5'- cUCGGCGcgGUgGGGuCGcACUCGUCGu -3'
miRNA:   3'- uAGCCGCugUAgCCC-GC-UGAGUAGCc -5'
23459 5' -56.6 NC_005259.1 + 57444 0.68 0.590075
Target:  5'- -gCGGCGAgGUUGGuGCGACgcugCGGc -3'
miRNA:   3'- uaGCCGCUgUAGCC-CGCUGaguaGCC- -5'
23459 5' -56.6 NC_005259.1 + 58952 0.75 0.23812
Target:  5'- cGUCGGCcuuGGCcagcagGUCGGGCaGCUCGUCGGc -3'
miRNA:   3'- -UAGCCG---CUG------UAGCCCGcUGAGUAGCC- -5'
23459 5' -56.6 NC_005259.1 + 60063 0.68 0.600679
Target:  5'- cUCGGgcucaGGC-UCGGGCGGCUCGcCGa -3'
miRNA:   3'- uAGCCg----CUGuAGCCCGCUGAGUaGCc -5'
23459 5' -56.6 NC_005259.1 + 60316 0.66 0.746668
Target:  5'- -aCGGCGAaacCGGGCGuguugacGCUCAaggCGGc -3'
miRNA:   3'- uaGCCGCUguaGCCCGC-------UGAGUa--GCC- -5'
23459 5' -56.6 NC_005259.1 + 60589 0.69 0.568976
Target:  5'- -aCGGCGA-GUCGGGUGcCgUCAUCGa -3'
miRNA:   3'- uaGCCGCUgUAGCCCGCuG-AGUAGCc -5'
23459 5' -56.6 NC_005259.1 + 61028 0.72 0.368342
Target:  5'- cUCGGUGGCGgcgaggucgaccgaCGGGCGGCUCAccuugugccgggcaUCGGc -3'
miRNA:   3'- uAGCCGCUGUa-------------GCCCGCUGAGU--------------AGCC- -5'
23459 5' -56.6 NC_005259.1 + 62744 0.66 0.727341
Target:  5'- -cCGGCGGCAguaCGcGGUGguACUCGUgGGc -3'
miRNA:   3'- uaGCCGCUGUa--GC-CCGC--UGAGUAgCC- -5'
23459 5' -56.6 NC_005259.1 + 64149 0.7 0.466413
Target:  5'- cGUCGGCGAUgcccuugacguaGUC-GGCGACUgucugugCGUCGGg -3'
miRNA:   3'- -UAGCCGCUG------------UAGcCCGCUGA-------GUAGCC- -5'
23459 5' -56.6 NC_005259.1 + 65729 0.66 0.717035
Target:  5'- --aGGCGAguUgGGGuCGACcCAUUGGa -3'
miRNA:   3'- uagCCGCUguAgCCC-GCUGaGUAGCC- -5'
23459 5' -56.6 NC_005259.1 + 66146 0.67 0.653906
Target:  5'- -aCGGCGuGCGUUGGcauccugugugcGCGcauGCUCAUCGGc -3'
miRNA:   3'- uaGCCGC-UGUAGCC------------CGC---UGAGUAGCC- -5'
23459 5' -56.6 NC_005259.1 + 68317 0.74 0.312032
Target:  5'- -cCGGCGACGggaucucgaugaUgGGGCucagcGGCUCAUCGGg -3'
miRNA:   3'- uaGCCGCUGU------------AgCCCG-----CUGAGUAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.