miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23460 5' -56 NC_005259.1 + 200 0.67 0.645548
Target:  5'- -gGCGCGuggcGCGACGGCaagcaguucgGGCaGUGCUAc -3'
miRNA:   3'- caUGCGCu---UGUUGCCG----------UCGcCACGGU- -5'
23460 5' -56 NC_005259.1 + 59400 0.67 0.645548
Target:  5'- -cGCGCGAGCGugaccucgcgcAUGGCGuCGGcgGCCAu -3'
miRNA:   3'- caUGCGCUUGU-----------UGCCGUcGCCa-CGGU- -5'
23460 5' -56 NC_005259.1 + 43955 0.67 0.639035
Target:  5'- ---gGCGAugGGCggGGCcgccgccugaccgagGGCGGUGCCGa -3'
miRNA:   3'- caugCGCUugUUG--CCG---------------UCGCCACGGU- -5'
23460 5' -56 NC_005259.1 + 6381 0.68 0.623831
Target:  5'- -gGCGCGAugguCAACGucauuuucgaGGCGGUGCCc -3'
miRNA:   3'- caUGCGCUu---GUUGCcg--------UCGCCACGGu -5'
23460 5' -56 NC_005259.1 + 50965 0.68 0.622745
Target:  5'- -cGCGUGGcugucccAC-GCGGCgAGCGGUGUCGa -3'
miRNA:   3'- caUGCGCU-------UGuUGCCG-UCGCCACGGU- -5'
23460 5' -56 NC_005259.1 + 27121 0.68 0.617318
Target:  5'- -cAUGCGGAUcuccuacgguuugagGGCGGCuGCGGUGUUg -3'
miRNA:   3'- caUGCGCUUG---------------UUGCCGuCGCCACGGu -5'
23460 5' -56 NC_005259.1 + 5721 0.68 0.598895
Target:  5'- -aGCGcCGGACGGCGGCcauucucgcggccaAGCGGcgagcUGCCu -3'
miRNA:   3'- caUGC-GCUUGUUGCCG--------------UCGCC-----ACGGu -5'
23460 5' -56 NC_005259.1 + 39752 0.68 0.595651
Target:  5'- uGUGCgacaGCGGcaGCAGCGGCAGCcugcugcuggugaucGGUGCg- -3'
miRNA:   3'- -CAUG----CGCU--UGUUGCCGUCG---------------CCACGgu -5'
23460 5' -56 NC_005259.1 + 9257 0.68 0.59133
Target:  5'- -aGCGCccGAACcggucccgaAACGGCGaguuauGCGGUGCCGc -3'
miRNA:   3'- caUGCG--CUUG---------UUGCCGU------CGCCACGGU- -5'
23460 5' -56 NC_005259.1 + 20359 0.68 0.59133
Target:  5'- cUACGCGuccaccucguGCGACGGUGgauacGUGGUGCCu -3'
miRNA:   3'- cAUGCGCu---------UGUUGCCGU-----CGCCACGGu -5'
23460 5' -56 NC_005259.1 + 27213 0.68 0.59133
Target:  5'- --cCGCGAGCu-CGGUgAGCGG-GCCGa -3'
miRNA:   3'- cauGCGCUUGuuGCCG-UCGCCaCGGU- -5'
23460 5' -56 NC_005259.1 + 41103 0.68 0.580552
Target:  5'- ---gGCGGuCGGCGGUaugacgaugucGGCGGUGCCc -3'
miRNA:   3'- caugCGCUuGUUGCCG-----------UCGCCACGGu -5'
23460 5' -56 NC_005259.1 + 67971 0.68 0.569815
Target:  5'- -aGCGCGcGCAGCGGC-GUGGccaccGCCGc -3'
miRNA:   3'- caUGCGCuUGUUGCCGuCGCCa----CGGU- -5'
23460 5' -56 NC_005259.1 + 43868 0.69 0.559128
Target:  5'- --cCGUGAcgACAcCGGCAGCGuUGCCGc -3'
miRNA:   3'- cauGCGCU--UGUuGCCGUCGCcACGGU- -5'
23460 5' -56 NC_005259.1 + 13774 0.7 0.506685
Target:  5'- -gACGUGuucgacGGCGACGaGCAGUGGUGCg- -3'
miRNA:   3'- caUGCGC------UUGUUGC-CGUCGCCACGgu -5'
23460 5' -56 NC_005259.1 + 25995 0.7 0.476237
Target:  5'- -gAgGUGAACAACGgaaguaGCAGCGGgaugGCCGc -3'
miRNA:   3'- caUgCGCUUGUUGC------CGUCGCCa---CGGU- -5'
23460 5' -56 NC_005259.1 + 3119 0.7 0.456451
Target:  5'- uUGCGCGGcacCGugGGCAGCGGacgGCa- -3'
miRNA:   3'- cAUGCGCUu--GUugCCGUCGCCa--CGgu -5'
23460 5' -56 NC_005259.1 + 51279 0.7 0.453522
Target:  5'- gGUGCGCGGcaAGCGGCAGCGcccgacaucuuccaGUGCg- -3'
miRNA:   3'- -CAUGCGCUugUUGCCGUCGC--------------CACGgu -5'
23460 5' -56 NC_005259.1 + 64904 0.71 0.446726
Target:  5'- -gACaCGAGCGACGGCgAGCGugaggaugacgaGUGCCAg -3'
miRNA:   3'- caUGcGCUUGUUGCCG-UCGC------------CACGGU- -5'
23460 5' -56 NC_005259.1 + 36242 0.71 0.437117
Target:  5'- -aGCGCGAGCGccugcguCGGCAGCGccacGCCGg -3'
miRNA:   3'- caUGCGCUUGUu------GCCGUCGCca--CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.