Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23462 | 3' | -57.1 | NC_005259.1 | + | 26525 | 0.7 | 0.473671 |
Target: 5'- gAGCGCGGUGAGCagcuuGGCcaccacgaucucaccGAGgcuguaGCCGCc -3' miRNA: 3'- -UCGCGCCACUCGcu---CCG---------------CUUa-----UGGCG- -5' |
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23462 | 3' | -57.1 | NC_005259.1 | + | 42943 | 0.7 | 0.473671 |
Target: 5'- -uCGCcGUGGGCGAGGCcgccguugucgaacgGGAUGCCGg -3' miRNA: 3'- ucGCGcCACUCGCUCCG---------------CUUAUGGCg -5' |
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23462 | 3' | -57.1 | NC_005259.1 | + | 45304 | 0.69 | 0.489498 |
Target: 5'- cGCGcCGGUGAcGcCGAGGCc---GCCGCc -3' miRNA: 3'- uCGC-GCCACU-C-GCUCCGcuuaUGGCG- -5' |
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23462 | 3' | -57.1 | NC_005259.1 | + | 58938 | 0.69 | 0.489498 |
Target: 5'- gGGCGCGGUGgcAGCGucGGCcuugGCCaGCa -3' miRNA: 3'- -UCGCGCCAC--UCGCu-CCGcuuaUGG-CG- -5' |
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23462 | 3' | -57.1 | NC_005259.1 | + | 64909 | 0.69 | 0.489498 |
Target: 5'- gAGCGaCGGcGAGCguGAGGaugaCGAGUGCCaGCg -3' miRNA: 3'- -UCGC-GCCaCUCG--CUCC----GCUUAUGG-CG- -5' |
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23462 | 3' | -57.1 | NC_005259.1 | + | 66921 | 0.69 | 0.492493 |
Target: 5'- cAGCGCgcggugcucgaccggGGUGAGCGGgacaccGGCGAGcuguuucUugCGCg -3' miRNA: 3'- -UCGCG---------------CCACUCGCU------CCGCUU-------AugGCG- -5' |
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23462 | 3' | -57.1 | NC_005259.1 | + | 32878 | 0.69 | 0.526993 |
Target: 5'- cGCGCGGUGAucgauucaccggggGCGAgGGUGAGccacccggcCCGCu -3' miRNA: 3'- uCGCGCCACU--------------CGCU-CCGCUUau-------GGCG- -5' |
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23462 | 3' | -57.1 | NC_005259.1 | + | 29953 | 0.68 | 0.550836 |
Target: 5'- cGGuCGCGGcuGGUGGGGCGGGcggugACCGUc -3' miRNA: 3'- -UC-GCGCCacUCGCUCCGCUUa----UGGCG- -5' |
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23462 | 3' | -57.1 | NC_005259.1 | + | 6547 | 0.68 | 0.550836 |
Target: 5'- gGGCgaGCGGUGAagcuguGCGcGGCGugucagGCCGCc -3' miRNA: 3'- -UCG--CGCCACU------CGCuCCGCuua---UGGCG- -5' |
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23462 | 3' | -57.1 | NC_005259.1 | + | 62847 | 0.68 | 0.550836 |
Target: 5'- cGCGCGGuUGA-CGAGcagccgcucggcGCGAGguagGCCGCu -3' miRNA: 3'- uCGCGCC-ACUcGCUC------------CGCUUa---UGGCG- -5' |
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23462 | 3' | -57.1 | NC_005259.1 | + | 56930 | 0.68 | 0.561307 |
Target: 5'- cGCGuCGGUGAGCaugcgguuGGCGA--ACuCGCg -3' miRNA: 3'- uCGC-GCCACUCGcu------CCGCUuaUG-GCG- -5' |
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23462 | 3' | -57.1 | NC_005259.1 | + | 9030 | 0.68 | 0.561307 |
Target: 5'- -aCGCGGUGcucgaucauguGCGGGGCGGuaACCGg -3' miRNA: 3'- ucGCGCCACu----------CGCUCCGCUuaUGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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