Results 41 - 60 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23463 | 5' | -61.6 | NC_005259.1 | + | 28156 | 0.67 | 0.392112 |
Target: 5'- cCGGCCUCGacGCGCUGcCCUugacguaguccggUGGCGAa- -3' miRNA: 3'- -GCCGGAGC--CGUGGCuGGA-------------GCCGCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 27373 | 0.71 | 0.236038 |
Target: 5'- gGuGCC-CGGCACggUGACCggCGGCGGUGu -3' miRNA: 3'- gC-CGGaGCCGUG--GCUGGa-GCCGCUAC- -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 27152 | 0.68 | 0.384519 |
Target: 5'- gCGGUgUUGGgGCCaacgauGCCgUCGGCGAUGa -3' miRNA: 3'- -GCCGgAGCCgUGGc-----UGG-AGCCGCUAC- -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 27048 | 0.66 | 0.474064 |
Target: 5'- uGGCCUUGGC-CUGAgCgacggucaCGGCGAc- -3' miRNA: 3'- gCCGGAGCCGuGGCUgGa-------GCCGCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 24275 | 0.68 | 0.367998 |
Target: 5'- uGGCUggaaGCGCuCGACCUCGG-GAUGg -3' miRNA: 3'- gCCGGagc-CGUG-GCUGGAGCCgCUAC- -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 24237 | 0.71 | 0.219249 |
Target: 5'- gGGCCgaGGCACgCGAgUUCGGCGAg- -3' miRNA: 3'- gCCGGagCCGUG-GCUgGAGCCGCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 23643 | 0.67 | 0.43693 |
Target: 5'- uGGUUUCGGC-CCG-CCgaCGGCGAc- -3' miRNA: 3'- gCCGGAGCCGuGGCuGGa-GCCGCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 22385 | 0.67 | 0.419 |
Target: 5'- -aGCC-CGGU--CGGCCUCGGCGAc- -3' miRNA: 3'- gcCGGaGCCGugGCUGGAGCCGCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 18900 | 0.67 | 0.42791 |
Target: 5'- uCGaCCUCGGCAacgauCUGAUgCUCGGCGAc- -3' miRNA: 3'- -GCcGGAGCCGU-----GGCUG-GAGCCGCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 18728 | 0.69 | 0.306911 |
Target: 5'- gGGCCgccCGGCAUCGGuaaguCgUCGGUGGUGc -3' miRNA: 3'- gCCGGa--GCCGUGGCU-----GgAGCCGCUAC- -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 13226 | 0.66 | 0.483595 |
Target: 5'- gGGCCUcgacCGGcCACCGugagggccgagcACC-CGGCGGUa -3' miRNA: 3'- gCCGGA----GCC-GUGGC------------UGGaGCCGCUAc -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 13086 | 0.69 | 0.328871 |
Target: 5'- cCGGCCaucCGGUgccACCGACCccggcccgcUCGGCGGc- -3' miRNA: 3'- -GCCGGa--GCCG---UGGCUGG---------AGCCGCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 12350 | 0.67 | 0.419 |
Target: 5'- -cGCCUCGaaACCGGCCUC-GCGAc- -3' miRNA: 3'- gcCGGAGCcgUGGCUGGAGcCGCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 12161 | 0.71 | 0.219249 |
Target: 5'- -cGCCgaCGGCACCGcCCUCGGuCGAa- -3' miRNA: 3'- gcCGGa-GCCGUGGCuGGAGCC-GCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 10933 | 0.7 | 0.279402 |
Target: 5'- uCGGCgaaCUCGGUGUCGACCUCGuCGGUGu -3' miRNA: 3'- -GCCG---GAGCCGUGGCUGGAGCcGCUAC- -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 10413 | 0.79 | 0.065809 |
Target: 5'- aGGcCCUUGaGCACCGuCCUCGGCGAg- -3' miRNA: 3'- gCC-GGAGC-CGUGGCuGGAGCCGCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 10327 | 0.72 | 0.203491 |
Target: 5'- uCGGgCUCGGCGaCGGgCUCGGCGGc- -3' miRNA: 3'- -GCCgGAGCCGUgGCUgGAGCCGCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 9557 | 0.69 | 0.321424 |
Target: 5'- cCGGCCUCG--ACCG-CgUCGGCGAg- -3' miRNA: 3'- -GCCGGAGCcgUGGCuGgAGCCGCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 8532 | 0.69 | 0.306911 |
Target: 5'- -aGCCaaUCGGCGauGAgCUCGGCGGUGu -3' miRNA: 3'- gcCGG--AGCCGUggCUgGAGCCGCUAC- -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 8376 | 0.88 | 0.014043 |
Target: 5'- gCGGCCUCGGCAUCGgcgagaGCCUCGGCGAg- -3' miRNA: 3'- -GCCGGAGCCGUGGC------UGGAGCCGCUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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