Results 61 - 67 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23463 | 5' | -61.6 | NC_005259.1 | + | 46649 | 0.69 | 0.299145 |
Target: 5'- uGGCCacaCGGCugCGGuugagguUCUCGGCGAg- -3' miRNA: 3'- gCCGGa--GCCGugGCU-------GGAGCCGCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 41104 | 0.7 | 0.28609 |
Target: 5'- gCGGUCggCGGUAUgaCGAUgUCGGCGGUGc -3' miRNA: 3'- -GCCGGa-GCCGUG--GCUGgAGCCGCUAC- -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 10933 | 0.7 | 0.279402 |
Target: 5'- uCGGCgaaCUCGGUGUCGACCUCGuCGGUGu -3' miRNA: 3'- -GCCG---GAGCCGUGGCUGGAGCcGCUAC- -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 55878 | 0.7 | 0.272838 |
Target: 5'- aGcGCCUC-GCcCCGACCUCGGgGGUc -3' miRNA: 3'- gC-CGGAGcCGuGGCUGGAGCCgCUAc -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 293 | 0.7 | 0.266399 |
Target: 5'- gCGGCCUC-GCGCUGAUCUcgacCGGgGGUGc -3' miRNA: 3'- -GCCGGAGcCGUGGCUGGA----GCCgCUAC- -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 58227 | 0.71 | 0.247819 |
Target: 5'- uGGCCUCGaGC-UCGGgCUCGGUGAa- -3' miRNA: 3'- gCCGGAGC-CGuGGCUgGAGCCGCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 8376 | 0.88 | 0.014043 |
Target: 5'- gCGGCCUCGGCAUCGgcgagaGCCUCGGCGAg- -3' miRNA: 3'- -GCCGGAGCCGUGGC------UGGAGCCGCUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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