Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23463 | 5' | -61.6 | NC_005259.1 | + | 55878 | 0.7 | 0.272838 |
Target: 5'- aGcGCCUC-GCcCCGACCUCGGgGGUc -3' miRNA: 3'- gC-CGGAGcCGuGGCUGGAGCCgCUAc -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 293 | 0.7 | 0.266399 |
Target: 5'- gCGGCCUC-GCGCUGAUCUcgacCGGgGGUGc -3' miRNA: 3'- -GCCGGAGcCGUGGCUGGA----GCCgCUAC- -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 45743 | 0.75 | 0.135167 |
Target: 5'- aGGCCgc-GCACCG-CCUCGGgGAUGa -3' miRNA: 3'- gCCGGagcCGUGGCuGGAGCCgCUAC- -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 43316 | 0.75 | 0.12173 |
Target: 5'- uGGCUgcgUUGGcCACCG-CCUUGGCGAUGg -3' miRNA: 3'- gCCGG---AGCC-GUGGCuGGAGCCGCUAC- -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 43177 | 0.76 | 0.106679 |
Target: 5'- aGcGCgaagUCGGUACCGACCUCGGCGGc- -3' miRNA: 3'- gC-CGg---AGCCGUGGCUGGAGCCGCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 51449 | 0.77 | 0.095659 |
Target: 5'- gGGCCUC-GCGCCGAuagagcuuguugcCCUCGGCGAc- -3' miRNA: 3'- gCCGGAGcCGUGGCU-------------GGAGCCGCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 1251 | 0.77 | 0.093389 |
Target: 5'- cCGGCCUCGGCAUC-ACCUCGGaucaCGAg- -3' miRNA: 3'- -GCCGGAGCCGUGGcUGGAGCC----GCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 34023 | 0.78 | 0.07951 |
Target: 5'- cCGGCCUCGGCGgCGugCgUCGGCGc-- -3' miRNA: 3'- -GCCGGAGCCGUgGCugG-AGCCGCuac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 41471 | 0.78 | 0.073332 |
Target: 5'- gCGGCCcgugacgccgUCGaGCA-CGACCUCGGCGGUGg -3' miRNA: 3'- -GCCGG----------AGC-CGUgGCUGGAGCCGCUAC- -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 10413 | 0.79 | 0.065809 |
Target: 5'- aGGcCCUUGaGCACCGuCCUCGGCGAg- -3' miRNA: 3'- gCC-GGAGC-CGUGGCuGGAGCCGCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 60145 | 0.74 | 0.149958 |
Target: 5'- gCGGCCUUGGcCGCCG-CCUCaGCGGc- -3' miRNA: 3'- -GCCGGAGCC-GUGGCuGGAGcCGCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 67764 | 0.73 | 0.166206 |
Target: 5'- cCGGCCacCGGcCACCGACCacgCGGUGAc- -3' miRNA: 3'- -GCCGGa-GCC-GUGGCUGGa--GCCGCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 58227 | 0.71 | 0.247819 |
Target: 5'- uGGCCUCGaGC-UCGGgCUCGGUGAa- -3' miRNA: 3'- gCCGGAGC-CGuGGCUgGAGCCGCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 27373 | 0.71 | 0.236038 |
Target: 5'- gGuGCC-CGGCACggUGACCggCGGCGGUGu -3' miRNA: 3'- gC-CGGaGCCGUG--GCUGGa-GCCGCUAC- -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 12161 | 0.71 | 0.219249 |
Target: 5'- -cGCCgaCGGCACCGcCCUCGGuCGAa- -3' miRNA: 3'- gcCGGa-GCCGUGGCuGGAGCC-GCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 24237 | 0.71 | 0.219249 |
Target: 5'- gGGCCgaGGCACgCGAgUUCGGCGAg- -3' miRNA: 3'- gCCGGagCCGUG-GCUgGAGCCGCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 44757 | 0.71 | 0.219249 |
Target: 5'- aGGCuCUUGaGCACCGAUCccgcaUCGGCGGUc -3' miRNA: 3'- gCCG-GAGC-CGUGGCUGG-----AGCCGCUAc -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 10327 | 0.72 | 0.203491 |
Target: 5'- uCGGgCUCGGCGaCGGgCUCGGCGGc- -3' miRNA: 3'- -GCCgGAGCCGUgGCUgGAGCCGCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 32211 | 0.72 | 0.193539 |
Target: 5'- uGGCCUCaGaCACCGacGCCUCGGCa--- -3' miRNA: 3'- gCCGGAGcC-GUGGC--UGGAGCCGcuac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 58740 | 0.72 | 0.188724 |
Target: 5'- uGGCaC-CGGCACCGGCgaagUUCGGCGAa- -3' miRNA: 3'- gCCG-GaGCCGUGGCUG----GAGCCGCUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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