miRNA display CGI


Results 41 - 60 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23463 5' -61.6 NC_005259.1 + 51449 0.77 0.095659
Target:  5'- gGGCCUC-GCGCCGAuagagcuuguugcCCUCGGCGAc- -3'
miRNA:   3'- gCCGGAGcCGUGGCU-------------GGAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 1251 0.77 0.093389
Target:  5'- cCGGCCUCGGCAUC-ACCUCGGaucaCGAg- -3'
miRNA:   3'- -GCCGGAGCCGUGGcUGGAGCC----GCUac -5'
23463 5' -61.6 NC_005259.1 + 34023 0.78 0.07951
Target:  5'- cCGGCCUCGGCGgCGugCgUCGGCGc-- -3'
miRNA:   3'- -GCCGGAGCCGUgGCugG-AGCCGCuac -5'
23463 5' -61.6 NC_005259.1 + 41471 0.78 0.073332
Target:  5'- gCGGCCcgugacgccgUCGaGCA-CGACCUCGGCGGUGg -3'
miRNA:   3'- -GCCGG----------AGC-CGUgGCUGGAGCCGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 10413 0.79 0.065809
Target:  5'- aGGcCCUUGaGCACCGuCCUCGGCGAg- -3'
miRNA:   3'- gCC-GGAGC-CGUGGCuGGAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 44757 0.71 0.219249
Target:  5'- aGGCuCUUGaGCACCGAUCccgcaUCGGCGGUc -3'
miRNA:   3'- gCCG-GAGC-CGUGGCUGG-----AGCCGCUAc -5'
23463 5' -61.6 NC_005259.1 + 24237 0.71 0.219249
Target:  5'- gGGCCgaGGCACgCGAgUUCGGCGAg- -3'
miRNA:   3'- gCCGGagCCGUG-GCUgGAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 4120 0.69 0.328871
Target:  5'- gCGGCCUCGaCgugGCCaaGACCgUCGGCGAg- -3'
miRNA:   3'- -GCCGGAGCcG---UGG--CUGG-AGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 9557 0.69 0.321424
Target:  5'- cCGGCCUCG--ACCG-CgUCGGCGAg- -3'
miRNA:   3'- -GCCGGAGCcgUGGCuGgAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 8532 0.69 0.306911
Target:  5'- -aGCCaaUCGGCGauGAgCUCGGCGGUGu -3'
miRNA:   3'- gcCGG--AGCCGUggCUgGAGCCGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 18728 0.69 0.306911
Target:  5'- gGGCCgccCGGCAUCGGuaaguCgUCGGUGGUGc -3'
miRNA:   3'- gCCGGa--GCCGUGGCU-----GgAGCCGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 67208 0.69 0.299844
Target:  5'- -cGCCgcugUCGGCggggucgauGCCGACCaCGGCGGUGu -3'
miRNA:   3'- gcCGG----AGCCG---------UGGCUGGaGCCGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 46649 0.69 0.299145
Target:  5'- uGGCCacaCGGCugCGGuugagguUCUCGGCGAg- -3'
miRNA:   3'- gCCGGa--GCCGugGCU-------GGAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 41104 0.7 0.28609
Target:  5'- gCGGUCggCGGUAUgaCGAUgUCGGCGGUGc -3'
miRNA:   3'- -GCCGGa-GCCGUG--GCUGgAGCCGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 10933 0.7 0.279402
Target:  5'- uCGGCgaaCUCGGUGUCGACCUCGuCGGUGu -3'
miRNA:   3'- -GCCG---GAGCCGUGGCUGGAGCcGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 55878 0.7 0.272838
Target:  5'- aGcGCCUC-GCcCCGACCUCGGgGGUc -3'
miRNA:   3'- gC-CGGAGcCGuGGCUGGAGCCgCUAc -5'
23463 5' -61.6 NC_005259.1 + 293 0.7 0.266399
Target:  5'- gCGGCCUC-GCGCUGAUCUcgacCGGgGGUGc -3'
miRNA:   3'- -GCCGGAGcCGUGGCUGGA----GCCgCUAC- -5'
23463 5' -61.6 NC_005259.1 + 58227 0.71 0.247819
Target:  5'- uGGCCUCGaGC-UCGGgCUCGGUGAa- -3'
miRNA:   3'- gCCGGAGC-CGuGGCUgGAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 27373 0.71 0.236038
Target:  5'- gGuGCC-CGGCACggUGACCggCGGCGGUGu -3'
miRNA:   3'- gC-CGGaGCCGUG--GCUGGa-GCCGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 12161 0.71 0.219249
Target:  5'- -cGCCgaCGGCACCGcCCUCGGuCGAa- -3'
miRNA:   3'- gcCGGa-GCCGUGGCuGGAGCC-GCUac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.