miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23465 5' -54.7 NC_005259.1 + 15159 0.78 0.158178
Target:  5'- gUGGCCgaGGCCgaGGCCAUCcUCGAc -3'
miRNA:   3'- -ACCGGaaCCGGaaCCGGUAGuAGUUa -5'
23465 5' -54.7 NC_005259.1 + 45497 0.73 0.348505
Target:  5'- gUGGCCUUGGUCgcugUGGCCAccgCGcCGGUg -3'
miRNA:   3'- -ACCGGAACCGGa---ACCGGUa--GUaGUUA- -5'
23465 5' -54.7 NC_005259.1 + 58955 0.71 0.440467
Target:  5'- cGGCCUUGGCCagcaGGUCGggcagcUCGUCGGc -3'
miRNA:   3'- aCCGGAACCGGaa--CCGGU------AGUAGUUa -5'
23465 5' -54.7 NC_005259.1 + 27047 0.7 0.501819
Target:  5'- uUGGCCUUGGCCUgagcgacGGUCAcggcgaCAUCGc- -3'
miRNA:   3'- -ACCGGAACCGGAa------CCGGUa-----GUAGUua -5'
23465 5' -54.7 NC_005259.1 + 60131 0.69 0.555647
Target:  5'- cGGCCUcguccugcgcGGCCUUGGCCGcCGccUCAGc -3'
miRNA:   3'- aCCGGAa---------CCGGAACCGGUaGU--AGUUa -5'
23465 5' -54.7 NC_005259.1 + 44277 0.68 0.644551
Target:  5'- aGGCCgaacGCCUUGGCCAgCG-CGAg -3'
miRNA:   3'- aCCGGaac-CGGAACCGGUaGUaGUUa -5'
23465 5' -54.7 NC_005259.1 + 47316 0.68 0.644551
Target:  5'- uUGGCCUgaccggcGGCCUUGGUCAgccccgugaUCGUUu-- -3'
miRNA:   3'- -ACCGGAa------CCGGAACCGGU---------AGUAGuua -5'
23465 5' -54.7 NC_005259.1 + 65793 0.68 0.644551
Target:  5'- aUGGCCUcgacgcgcUGGUCgaaacgcUGGCCGUCGaccUCGAa -3'
miRNA:   3'- -ACCGGA--------ACCGGa------ACCGGUAGU---AGUUa -5'
23465 5' -54.7 NC_005259.1 + 45161 0.67 0.655716
Target:  5'- aGGCCgcccUUGGCCUUGuugcgcGCCGagGUCAGc -3'
miRNA:   3'- aCCGG----AACCGGAAC------CGGUagUAGUUa -5'
23465 5' -54.7 NC_005259.1 + 8758 0.66 0.710982
Target:  5'- aGGUCgaGGcCCUUGGCCAgcgCggCGGUg -3'
miRNA:   3'- aCCGGaaCC-GGAACCGGUa--GuaGUUA- -5'
23465 5' -54.7 NC_005259.1 + 4459 0.66 0.753823
Target:  5'- gGGCagcguaugGGCCaaGGCCAUCggCGGUg -3'
miRNA:   3'- aCCGgaa-----CCGGaaCCGGUAGuaGUUA- -5'
23465 5' -54.7 NC_005259.1 + 47871 0.66 0.753823
Target:  5'- uUGGCCUcuuccagcuUGGCCg-GGUCAgCGUCGGc -3'
miRNA:   3'- -ACCGGA---------ACCGGaaCCGGUaGUAGUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.