Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23466 | 3' | -60 | NC_005259.1 | + | 52928 | 0.66 | 0.573801 |
Target: 5'- --cUCGAuGGCCuGGUcGCUCAaCGCCc -3' miRNA: 3'- cgcAGCU-CCGGcCCGuCGAGUaGCGG- -5' |
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23466 | 3' | -60 | NC_005259.1 | + | 42546 | 0.72 | 0.264453 |
Target: 5'- ---cCGAGGUggCGGGCAGCUCGgcgagcaGCCg -3' miRNA: 3'- cgcaGCUCCG--GCCCGUCGAGUag-----CGG- -5' |
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23466 | 3' | -60 | NC_005259.1 | + | 54697 | 0.72 | 0.264453 |
Target: 5'- cGUGUCGAGG-CGGGUGGcCUCA--GCCu -3' miRNA: 3'- -CGCAGCUCCgGCCCGUC-GAGUagCGG- -5' |
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23466 | 3' | -60 | NC_005259.1 | + | 52894 | 0.72 | 0.264453 |
Target: 5'- cGCG-CGAGuaCGGGCAccuGCUCAcgacCGCCg -3' miRNA: 3'- -CGCaGCUCcgGCCCGU---CGAGUa---GCGG- -5' |
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23466 | 3' | -60 | NC_005259.1 | + | 4348 | 0.71 | 0.270925 |
Target: 5'- cGCGgugaUGAGcGCCGgacGGCAcgcccgugcccuGCUCAUCGCCa -3' miRNA: 3'- -CGCa---GCUC-CGGC---CCGU------------CGAGUAGCGG- -5' |
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23466 | 3' | -60 | NC_005259.1 | + | 59136 | 0.71 | 0.270925 |
Target: 5'- aGCGUCGAGcucggcagcgguGCCGGGgAgcuGCUCAgggCGCUu -3' miRNA: 3'- -CGCAGCUC------------CGGCCCgU---CGAGUa--GCGG- -5' |
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23466 | 3' | -60 | NC_005259.1 | + | 17802 | 0.71 | 0.277523 |
Target: 5'- cGCGauagCGAGGCCGGuG-AGCUCAgcgagGCCa -3' miRNA: 3'- -CGCa---GCUCCGGCC-CgUCGAGUag---CGG- -5' |
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23466 | 3' | -60 | NC_005259.1 | + | 66258 | 0.71 | 0.277523 |
Target: 5'- aGCG-CGGcccGcGCCGGGCggcGGCUCA-CGCCg -3' miRNA: 3'- -CGCaGCU---C-CGGCCCG---UCGAGUaGCGG- -5' |
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23466 | 3' | -60 | NC_005259.1 | + | 60277 | 0.71 | 0.28425 |
Target: 5'- -aG-CGcuGCCGGGCGGC-CAUCGUCg -3' miRNA: 3'- cgCaGCucCGGCCCGUCGaGUAGCGG- -5' |
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23466 | 3' | -60 | NC_005259.1 | + | 1595 | 0.73 | 0.217122 |
Target: 5'- -gGUCGAGGUCaGGGCAcaauuggcccucGuCUCGUCGCUa -3' miRNA: 3'- cgCAGCUCCGG-CCCGU------------C-GAGUAGCGG- -5' |
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23466 | 3' | -60 | NC_005259.1 | + | 36128 | 0.74 | 0.181836 |
Target: 5'- aGCaGUUGGGccGCCGGGCuGUcCGUCGCCa -3' miRNA: 3'- -CG-CAGCUC--CGGCCCGuCGaGUAGCGG- -5' |
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23466 | 3' | -60 | NC_005259.1 | + | 50678 | 0.75 | 0.147808 |
Target: 5'- cGCGUCGGuGCCGacgaGGCGcuGCUCGUCGUCg -3' miRNA: 3'- -CGCAGCUcCGGC----CCGU--CGAGUAGCGG- -5' |
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23466 | 3' | -60 | NC_005259.1 | + | 17353 | 0.79 | 0.079916 |
Target: 5'- cCGUCGAGGUC-GGCGGCUCggCGCUg -3' miRNA: 3'- cGCAGCUCCGGcCCGUCGAGuaGCGG- -5' |
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23466 | 3' | -60 | NC_005259.1 | + | 3318 | 0.78 | 0.089079 |
Target: 5'- uGCGUCGAcgugaGcGCCGGGCAGCUCugcgUGCUc -3' miRNA: 3'- -CGCAGCU-----C-CGGCCCGUCGAGua--GCGG- -5' |
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23466 | 3' | -60 | NC_005259.1 | + | 11307 | 0.77 | 0.104714 |
Target: 5'- gGCGU-GAGGCCGaGacgggcgcGCAGCUCGUCGUCg -3' miRNA: 3'- -CGCAgCUCCGGC-C--------CGUCGAGUAGCGG- -5' |
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23466 | 3' | -60 | NC_005259.1 | + | 44324 | 0.77 | 0.107559 |
Target: 5'- cGUGUUGAGcgccgcguagcuGCCGGGCuuguuccacGGCUCGUUGCCg -3' miRNA: 3'- -CGCAGCUC------------CGGCCCG---------UCGAGUAGCGG- -5' |
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23466 | 3' | -60 | NC_005259.1 | + | 10629 | 0.76 | 0.126205 |
Target: 5'- uGCGUCGAGGCCGaaCAGCUUGgccUCGCg -3' miRNA: 3'- -CGCAGCUCCGGCccGUCGAGU---AGCGg -5' |
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23466 | 3' | -60 | NC_005259.1 | + | 49587 | 0.76 | 0.135539 |
Target: 5'- gGCGggCGGGGUcagcaccucgaccuCGGGCAGCUCAucaUCGUCa -3' miRNA: 3'- -CGCa-GCUCCG--------------GCCCGUCGAGU---AGCGG- -5' |
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23466 | 3' | -60 | NC_005259.1 | + | 61034 | 0.76 | 0.139888 |
Target: 5'- gGCGgCGAGGUcgaccgaCGGGCGGCUCAccuugUGCCg -3' miRNA: 3'- -CGCaGCUCCG-------GCCCGUCGAGUa----GCGG- -5' |
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23466 | 3' | -60 | NC_005259.1 | + | 45627 | 0.76 | 0.140256 |
Target: 5'- cCGcCG-GGCCGGGCAGCg---CGCCg -3' miRNA: 3'- cGCaGCuCCGGCCCGUCGaguaGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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