miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23466 3' -60 NC_005259.1 + 60514 0.68 0.458655
Target:  5'- uUGUCGuagugcgccauggccGGGCCGGGaCGcagccGCUCGUCGgCa -3'
miRNA:   3'- cGCAGC---------------UCCGGCCC-GU-----CGAGUAGCgG- -5'
23466 3' -60 NC_005259.1 + 48441 0.68 0.454894
Target:  5'- gGCG-CGAGGCaGcGGCAGCgCGUuccaccgcgCGCCg -3'
miRNA:   3'- -CGCaGCUCCGgC-CCGUCGaGUA---------GCGG- -5'
23466 3' -60 NC_005259.1 + 4262 0.68 0.454894
Target:  5'- cUG-CGAGGacaaCGGGCGGCUgCGcUGCCa -3'
miRNA:   3'- cGCaGCUCCg---GCCCGUCGA-GUaGCGG- -5'
23466 3' -60 NC_005259.1 + 58547 0.68 0.453956
Target:  5'- cCGUCGAGGUuacggcuCGGGCGGUUgG--GCCg -3'
miRNA:   3'- cGCAGCUCCG-------GCCCGUCGAgUagCGG- -5'
23466 3' -60 NC_005259.1 + 51562 0.68 0.445563
Target:  5'- aCGUUGGGGCCaacgauccGGCAGC-CggUGCCg -3'
miRNA:   3'- cGCAGCUCCGGc-------CCGUCGaGuaGCGG- -5'
23466 3' -60 NC_005259.1 + 60049 0.68 0.445563
Target:  5'- uCGuUCGGGGUcuucuCGGGCucaGGCUCGggcggcUCGCCg -3'
miRNA:   3'- cGC-AGCUCCG-----GCCCG---UCGAGU------AGCGG- -5'
23466 3' -60 NC_005259.1 + 50412 0.68 0.436341
Target:  5'- cGCGcCGGugccuugaccGGCuCGGGCAGCggugCGggcucggggUCGCCg -3'
miRNA:   3'- -CGCaGCU----------CCG-GCCCGUCGa---GU---------AGCGG- -5'
23466 3' -60 NC_005259.1 + 42049 0.68 0.436341
Target:  5'- uGCGcuguccUCGGGG-UGGGCGGCUaggUAUCGCa -3'
miRNA:   3'- -CGC------AGCUCCgGCCCGUCGA---GUAGCGg -5'
23466 3' -60 NC_005259.1 + 16812 0.68 0.430861
Target:  5'- cGCGcUCGGGGCCgGGGUcaugauccgacacaaGGCggGUgGCCa -3'
miRNA:   3'- -CGC-AGCUCCGG-CCCG---------------UCGagUAgCGG- -5'
23466 3' -60 NC_005259.1 + 938 0.68 0.42723
Target:  5'- cGCGacagCGGaaaaGUCGGGCAGCUCG-CGCa -3'
miRNA:   3'- -CGCa---GCUc---CGGCCCGUCGAGUaGCGg -5'
23466 3' -60 NC_005259.1 + 35517 0.68 0.40935
Target:  5'- cCGcCGccGCCGGGCAcaccgcccGC-CGUCGCCg -3'
miRNA:   3'- cGCaGCucCGGCCCGU--------CGaGUAGCGG- -5'
23466 3' -60 NC_005259.1 + 24745 0.68 0.40935
Target:  5'- gGUGUgGGGuGCCGaGGC-GCUCAUCGa- -3'
miRNA:   3'- -CGCAgCUC-CGGC-CCGuCGAGUAGCgg -5'
23466 3' -60 NC_005259.1 + 5905 0.69 0.391945
Target:  5'- aCGUCGAGGUCGaGguGCUgcgcacCGUCGaCCg -3'
miRNA:   3'- cGCAGCUCCGGCcCguCGA------GUAGC-GG- -5'
23466 3' -60 NC_005259.1 + 27398 0.69 0.375028
Target:  5'- gGUGUCGGcaGCgGcGGCAGCUCggUGCCc -3'
miRNA:   3'- -CGCAGCUc-CGgC-CCGUCGAGuaGCGG- -5'
23466 3' -60 NC_005259.1 + 58667 0.69 0.365937
Target:  5'- gGUGcacCGGGGUgcagcuuccaucgCGGGguCGGCUCGUCGCCg -3'
miRNA:   3'- -CGCa--GCUCCG-------------GCCC--GUCGAGUAGCGG- -5'
23466 3' -60 NC_005259.1 + 27533 0.69 0.358613
Target:  5'- cCGUCGAGGCCccacGGCGGgaUGUUGCg -3'
miRNA:   3'- cGCAGCUCCGGc---CCGUCgaGUAGCGg -5'
23466 3' -60 NC_005259.1 + 7341 0.69 0.358613
Target:  5'- aCGUCGAGGCCGGaCAGacgUUcgUGCUg -3'
miRNA:   3'- cGCAGCUCCGGCCcGUCg--AGuaGCGG- -5'
23466 3' -60 NC_005259.1 + 23290 0.7 0.350596
Target:  5'- cGCGgugguuggguaUCGGGGuCCGGcGCGGUcggUGUCGCCg -3'
miRNA:   3'- -CGC-----------AGCUCC-GGCC-CGUCGa--GUAGCGG- -5'
23466 3' -60 NC_005259.1 + 56377 0.7 0.350596
Target:  5'- cCGUCGcGGGCCGcGuCGGCUgAUCGUCu -3'
miRNA:   3'- cGCAGC-UCCGGCcC-GUCGAgUAGCGG- -5'
23466 3' -60 NC_005259.1 + 68699 0.7 0.342707
Target:  5'- --aUCGAGG-CGGGCAGCgCGUCgguGCCc -3'
miRNA:   3'- cgcAGCUCCgGCCCGUCGaGUAG---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.