miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23466 5' -55.3 NC_005259.1 + 60572 0.66 0.789968
Target:  5'- -cGACGGUCAGg----CGGCCCACGg -3'
miRNA:   3'- gcUUGCCAGUUagcugGCCGGGUGUa -5'
23466 5' -55.3 NC_005259.1 + 21706 0.66 0.760375
Target:  5'- aGGACgGGUCAGaCGACCGcccugccgcCCCACAg -3'
miRNA:   3'- gCUUG-CCAGUUaGCUGGCc--------GGGUGUa -5'
23466 5' -55.3 NC_005259.1 + 1236 0.66 0.750242
Target:  5'- aGGACGGcugCAa--GACCGGCCUcgGCAUc -3'
miRNA:   3'- gCUUGCCa--GUuagCUGGCCGGG--UGUA- -5'
23466 5' -55.3 NC_005259.1 + 68849 0.66 0.750242
Target:  5'- aGGugGGcCAucauGUCGACUuGCCCGCGc -3'
miRNA:   3'- gCUugCCaGU----UAGCUGGcCGGGUGUa -5'
23466 5' -55.3 NC_005259.1 + 50358 0.66 0.750242
Target:  5'- aCGAuguCGGUguGcUCGGCgagaaacuCGGCCCACGUg -3'
miRNA:   3'- -GCUu--GCCAguU-AGCUG--------GCCGGGUGUA- -5'
23466 5' -55.3 NC_005259.1 + 13219 0.67 0.739993
Target:  5'- -cAGCGGUgGGccUCGACCGGCCaC-CGUg -3'
miRNA:   3'- gcUUGCCAgUU--AGCUGGCCGG-GuGUA- -5'
23466 5' -55.3 NC_005259.1 + 5014 0.68 0.644317
Target:  5'- ---gUGGUCGAgaUCGAuCCGGCcCCACAc -3'
miRNA:   3'- gcuuGCCAGUU--AGCU-GGCCG-GGUGUa -5'
23466 5' -55.3 NC_005259.1 + 66225 0.68 0.642154
Target:  5'- cCGAcgcacacGCGGUCGugcagccAUCGACgcagcgCGGCCCGCGc -3'
miRNA:   3'- -GCU-------UGCCAGU-------UAGCUG------GCCGGGUGUa -5'
23466 5' -55.3 NC_005259.1 + 41374 0.68 0.633497
Target:  5'- gCGuGCGGUCGAgcUUGGCCGGuaCCCAUg- -3'
miRNA:   3'- -GCuUGCCAGUU--AGCUGGCC--GGGUGua -5'
23466 5' -55.3 NC_005259.1 + 52565 0.68 0.633497
Target:  5'- cCGAcAUGGUCGAcCgGACCGGCCUgaGCGUc -3'
miRNA:   3'- -GCU-UGCCAGUUaG-CUGGCCGGG--UGUA- -5'
23466 5' -55.3 NC_005259.1 + 41102 0.68 0.632415
Target:  5'- -cGGCGGUCGgcgguaugacgauGUCGGCgGuGCCCGCGUc -3'
miRNA:   3'- gcUUGCCAGU-------------UAGCUGgC-CGGGUGUA- -5'
23466 5' -55.3 NC_005259.1 + 51709 0.69 0.568867
Target:  5'- cCGAACuGUCGAcCGGacaaGGCCCACAUg -3'
miRNA:   3'- -GCUUGcCAGUUaGCUgg--CCGGGUGUA- -5'
23466 5' -55.3 NC_005259.1 + 28110 0.7 0.547635
Target:  5'- uGGGcCGGUCGAUUGACCGuucguGCCgACGUa -3'
miRNA:   3'- gCUU-GCCAGUUAGCUGGC-----CGGgUGUA- -5'
23466 5' -55.3 NC_005259.1 + 60174 0.72 0.446282
Target:  5'- aCGGGCGGcgaacgccugcUCGAcCGACCGGgCCACGa -3'
miRNA:   3'- -GCUUGCC-----------AGUUaGCUGGCCgGGUGUa -5'
23466 5' -55.3 NC_005259.1 + 65880 0.76 0.246716
Target:  5'- gGGGCGGUCAAUCGGCgggaCGGuCCCGCc- -3'
miRNA:   3'- gCUUGCCAGUUAGCUG----GCC-GGGUGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.