miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23467 5' -66.4 NC_005259.1 + 57987 0.65 0.31542
Target:  5'- uCGUGACCCCGGuCGAgCCagCGaCCauguugaggaucguCCGGCg -3'
miRNA:   3'- -GCGUUGGGGCC-GCUgGG--GC-GG--------------GGCCG- -5'
23467 5' -66.4 NC_005259.1 + 60115 0.75 0.068692
Target:  5'- aGCGACUcgauaUCGGCGGCCUCGUCCUGcGCg -3'
miRNA:   3'- gCGUUGG-----GGCCGCUGGGGCGGGGC-CG- -5'
23467 5' -66.4 NC_005259.1 + 44509 0.74 0.078261
Target:  5'- gGguGCCCUGGCcACCCaCGCcgccgCCCGGCa -3'
miRNA:   3'- gCguUGGGGCCGcUGGG-GCG-----GGGCCG- -5'
23467 5' -66.4 NC_005259.1 + 64765 0.73 0.099547
Target:  5'- uCGCGacggugcGCCUCGGCGGCCCgCugcgacuggcuguguGCCUCGGCc -3'
miRNA:   3'- -GCGU-------UGGGGCCGCUGGG-G---------------CGGGGCCG- -5'
23467 5' -66.4 NC_005259.1 + 56914 0.73 0.101354
Target:  5'- cCGCAGCa--GGCGugCCCGCgUCGGUg -3'
miRNA:   3'- -GCGUUGgggCCGCugGGGCGgGGCCG- -5'
23467 5' -66.4 NC_005259.1 + 48143 0.72 0.103723
Target:  5'- cCGCcGCCCCGGCcACCaccucgcccgaaaCCGCCCCcGCc -3'
miRNA:   3'- -GCGuUGGGGCCGcUGG-------------GGCGGGGcCG- -5'
23467 5' -66.4 NC_005259.1 + 53193 0.71 0.123996
Target:  5'- uCGCGguguCCCCGGCGAUcagauucgcgucgCCCGCgCCCuGCu -3'
miRNA:   3'- -GCGUu---GGGGCCGCUG-------------GGGCG-GGGcCG- -5'
23467 5' -66.4 NC_005259.1 + 63956 0.71 0.130763
Target:  5'- aGCGagAUCUCGGCGGucucCCCCGCCuuGGa -3'
miRNA:   3'- gCGU--UGGGGCCGCU----GGGGCGGggCCg -5'
23467 5' -66.4 NC_005259.1 + 37476 0.71 0.134103
Target:  5'- aCGCcGCCgUUGGCuGACCCaC-CCCCGGCg -3'
miRNA:   3'- -GCGuUGG-GGCCG-CUGGG-GcGGGGCCG- -5'
23467 5' -66.4 NC_005259.1 + 46814 0.75 0.066743
Target:  5'- gCGC-ACCaCCGGCcACCUgagugagCGCCCCGGCg -3'
miRNA:   3'- -GCGuUGG-GGCCGcUGGG-------GCGGGGCCG- -5'
23467 5' -66.4 NC_005259.1 + 20157 0.75 0.065017
Target:  5'- cCGguGCCCUGGCcACCgcgcccgCCGCCUCGGCu -3'
miRNA:   3'- -GCguUGGGGCCGcUGG-------GGCGGGGCCG- -5'
23467 5' -66.4 NC_005259.1 + 8104 0.75 0.061857
Target:  5'- uGCGAUCCUGGCaGACCCCcgGCCUaguCGGCu -3'
miRNA:   3'- gCGUUGGGGCCG-CUGGGG--CGGG---GCCG- -5'
23467 5' -66.4 NC_005259.1 + 7995 0.8 0.026465
Target:  5'- uGCucuugaacCCCCGGUaGcCCCCGCCCCGGCg -3'
miRNA:   3'- gCGuu------GGGGCCG-CuGGGGCGGGGCCG- -5'
23467 5' -66.4 NC_005259.1 + 12952 0.79 0.030247
Target:  5'- gCGCGACCCCGcauCGACCCCGCgUCGGa -3'
miRNA:   3'- -GCGUUGGGGCc--GCUGGGGCGgGGCCg -5'
23467 5' -66.4 NC_005259.1 + 23748 0.79 0.032767
Target:  5'- gGCGACCCCGaCG-CCCCGCagaCCGGCc -3'
miRNA:   3'- gCGUUGGGGCcGCuGGGGCGg--GGCCG- -5'
23467 5' -66.4 NC_005259.1 + 67724 0.78 0.036451
Target:  5'- cCGuCAGCCucgauccgauaCCGGCGGCCacuaggCCGCCCCGGCc -3'
miRNA:   3'- -GC-GUUGG-----------GGCCGCUGG------GGCGGGGCCG- -5'
23467 5' -66.4 NC_005259.1 + 13551 0.77 0.048799
Target:  5'- uCGCGAUguggCCCGcCGACCCCGCCCCGa- -3'
miRNA:   3'- -GCGUUG----GGGCcGCUGGGGCGGGGCcg -5'
23467 5' -66.4 NC_005259.1 + 26668 0.76 0.052822
Target:  5'- gCGCA--CCCGGCGGCagCCCGCCCaucgaGGCg -3'
miRNA:   3'- -GCGUugGGGCCGCUG--GGGCGGGg----CCG- -5'
23467 5' -66.4 NC_005259.1 + 13331 0.76 0.055681
Target:  5'- gGUAACCCaCGGCGGgaCCGCCCCGccGCa -3'
miRNA:   3'- gCGUUGGG-GCCGCUggGGCGGGGC--CG- -5'
23467 5' -66.4 NC_005259.1 + 40143 0.76 0.060253
Target:  5'- aGCucGCCgUCGGUugucgGugCCCGCCCCGGCa -3'
miRNA:   3'- gCGu-UGG-GGCCG-----CugGGGCGGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.